Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2880 ATGCTGTGTAAACTGGTCCCGTTGCCGCGGAAGAAAAAACCCGGTTCGGTCCCGGTTTACCTCAACGTCTATGATCTCACCCCGATTAATGGGTATGCGTATTGGTTAGGCCTCGGAGTTTATCATTCTGGTGTTCAAGTTCATGGGGTTGAGTATGGATTTGGAGCGCATGAACGTAGCACGACTGGGATTTTTGAAGTGGAACCTGGACACTGTCCTGGATTCACCTTTAGAAAATCAGTTTACATTGGATCAACTGATCTCGGTGCGAAGGATGTCCGGGCACTCATGGAGAAGCTAGCTGCGGAATATCCTGGCAACACCTACCATCTTATACAAAAAAATTGCAACCACTTCTGCAATGATGTTTGCAACAAATTAACTGGAAAGTCAATCCCTCGATGGGTTAATCGACTTGCACGACTTGGTTTTCTCTGCAACTGTGTTCTTCCGCCCAGCCTGAACGAAAAGAAGGTTGGACCAGCGGCATTGACCAACAGGATTCCGGAAGAAGGAAAGAATAAGATGAGAAGCCAGTCCACAAGGCATGAGGCTTCCTCCAATCCTCCATTGTCAGCTAGCCGAAGACGTTGTCTTTCTCCACCTTCATCTGTAATTAATGGTTCTGCATCCTCAACCTTAACAGTAAAGTAG 654 0.4664 MLCKLVPLPRKKKPGSVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHERSTTGIFEVEPGHCPGFTFRKSVYIGSTDLGAKDVRALMEKLAAEYPGNTYHLIQKNCNHFCNDVCNKLTGKSIPRWVNRLARLGFLCNCVLPPSLNEKKVGPAALTNRIPEEGKNKMRSQSTRHEASSNPPLSASRRRCLSPPSSVINGSASSTLTVK* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2880 217 MobiDBLite consensus disorder prediction 161 217 - -
Lja5g2880 217 Gene3D PPPDE domains 12 163 IPR042266 -
Lja5g2880 217 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 215 - -
Lja5g2880 217 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Lja5g2880 217 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Lja5g2880 217 PANTHER DESUMOYLATING ISOPEPTIDASE 2 215 IPR008580 GO:0008233
Lja5g2880 217 MobiDBLite consensus disorder prediction 181 217 - -
Lja5g2880 217 Pfam PPPDE putative peptidase domain 18 150 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2880 Lja-Chr5 56658957 56662079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2880 K22763 - gmx:100786432 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2880 5 56658957 56662079 Lja1g3920 1 49649235 49650708 PCT