Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3920 ATGCTGTCTAAACTGGTATCTGGTCCAAGGAAGAAGAAATCTGGCACTGTCCCAGTTCACCTCAACGTGTATGATCTCACCCCTATCAATGGCTACGCCTATTGGCTTGGCCTTGGTGTCTACCATTCAGGTGTTCAAGTTCATGGTGTTGAATATGGATTTGGAGCACATGAGCATGAAACGACGGGGATTTTTGAAGTGCAGCCGAAAAACTGTCCAGGGTTTACTTTCAGGAAATCAATTTTGATAGGTACTACGGATCTAGGACCGAGTGAGGTTCGGGAATTCATGGAGAAGCTAGCTCAAGAGTACTCCGGGAACACCTATCATCTCATCTCGAAGAATTGCAACCACTTCTGTGCTGATGTTTGTCTCAAATTAACAGGGAAATCGATTCCTCGATGGGTTAATCGACTCGCTCGACTTGGTCTTCTCTGCAATTGTGTTCTTCCCACCGGCCTAAACGACGCAAAGGTTAGCCAAGTTACATCAGAAAGTGTTCAGGAAGGAGAAAAGAAGAAAGTAAGAAGTCAGTCTAGCAGGTATGAGGCTTCCTCCGATCCTGCGTTGTCATCTCGCCCTCGAAGTTCAGCAATTAAAAGTAGTAGCCAGAGATATTGCCGGCCTTCACCTTCATCTGTGATTAATGCTTCTTCAACATCAACATTAACAGTAAAGTAA 681 0.4493 MLSKLVSGPRKKKSGTVPVHLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYGFGAHEHETTGIFEVQPKNCPGFTFRKSILIGTTDLGPSEVREFMEKLAQEYSGNTYHLISKNCNHFCADVCLKLTGKSIPRWVNRLARLGLLCNCVLPTGLNDAKVSQVTSESVQEGEKKKVRSQSSRYEASSDPALSSRPRSSAIKSSSQRYCRPSPSSVINASSTSTLTVK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3920 226 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Lja1g3920 226 Gene3D PPPDE domains 12 174 IPR042266 -
Lja1g3920 226 MobiDBLite consensus disorder prediction 162 226 - -
Lja1g3920 226 PANTHER DESUMOYLATING ISOPEPTIDASE 2 224 IPR008580 GO:0008233
Lja1g3920 226 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Lja1g3920 226 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Lja1g3920 226 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 224 - -
Lja1g3920 226 MobiDBLite consensus disorder prediction 181 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3920 Lja-Chr1 49649235 49650708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3920 K22763 - gmx:100306675 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2880 5 56658957 56662079 Lja1g3920 1 49649235 49650708 PCT