Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2854 ATGGCTTCCCACAAGCTCATTGCTGCCATTTTTGTGCTTTCCCTCCTCTCTTACTCAACATTCTCCCACGCCTGCGGCTCATGCAACCCCACCCCCAAGCCGAAGCCGAAGCCGACGCCAGCACCAGCAGGCAAGTGCCCTAAGGACACGTTGAAGCTAGGAGCTTGTGCTGACCTTCTAGGACTTGTTAACGTTGTTCTTGGATCCCCTGCTTCGAGCAAGTGCTGTGCATTGTTGGAGGGTTTGGCTGATTTGGAGGCAGCAGTTTGCCTCTGCACTGCTGTTAAGGCCAATGTGCTTGGAATCAACTTGAATGTTCCTGTCACGCTCAGCGTCCTCCTTAGTGCTTGCCAGAAAACGGTTCCTTCTGGTTTCCAATGTGCATAA 387 0.5271 MASHKLIAAIFVLSLLSYSTFSHACGSCNPTPKPKPKPTPAPAGKCPKDTLKLGACADLLGLVNVVLGSPASSKCCALLEGLADLEAAVCLCTAVKANVLGINLNVPVTLSVLLSACQKTVPSGFQCA* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2854 128 Pfam Hydrophobic seed protein 46 128 IPR027923 -
Lja5g2854 128 SMART aai_6 46 127 IPR016140 -
Lja5g2854 128 Gene3D - 45 128 IPR036312 -
Lja5g2854 128 CDD HPS_like 44 127 IPR027923 -
Lja5g2854 128 PANTHER PROLINE-RICH PROTEIN DC2.15 1 127 - -
Lja5g2854 128 PANTHER - 1 127 - -
Lja5g2854 128 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 49 127 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2854 Lja-Chr5 56133319 56134313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2854 38 127 Acyl Lipid Metabolism Gene Families AT4G22490 39.785 8.20e-17 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2854 - - gmx:100306307 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2854 5 56133319 56134313 Lja5g2854 5 56133319 56134313 ECH
Lja5g2854 5 56133319 56134313 Lja1g3893 1 49086928 49087608 PCT