Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3893 ATGGCTTCCAACAAACTCTCTGCCATCTTTTTGGTGCTTTCTCTCCTTGCTTACTCAACATTCACTCAGGCTAATGTTTCATGCCCACCACCACCAAAGTCCACGCCCACACCTACACCCGCACCCGCACCCAAGCCCGCACAAAAGCCCACACCCGCACCCGCACCCAAGCCCACTACTCCCGCCACGCCGCCACAAGCACACTGCCCCACGGACGCCTTAAAGCTAGGGGTTTGTGCTGATGTGTTGGGCCTCGTTCACCTGGTTATTGGAACTCCTCCTACAAGCCCTTGTTGCACATTGATCAAGGGTTTGGCAGATTTGGAGGCTGCACTTTGCCTCTGCACTGCAATTAAGGGCAATGTGCTTGGATTAAACTTGAATGTACCTATTACGCTCAGCTTGATCCTCAGTGCTTGTCAAAAAACAGTCCCTCCTGGTTTCCAGTGCCCCTAA 456 0.5307 MASNKLSAIFLVLSLLAYSTFTQANVSCPPPPKSTPTPTPAPAPKPAQKPTPAPAPKPTTPATPPQAHCPTDALKLGVCADVLGLVHLVIGTPPTSPCCTLIKGLADLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQCP* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3893 151 MobiDBLite consensus disorder prediction 27 67 - -
Lja1g3893 151 SMART aai_6 69 150 IPR016140 -
Lja1g3893 151 PANTHER - 1 29 - -
Lja1g3893 151 PANTHER - 35 151 - -
Lja1g3893 151 MobiDBLite consensus disorder prediction 29 65 - -
Lja1g3893 151 Gene3D - 64 151 IPR036312 -
Lja1g3893 151 PANTHER LIPID TRANSFER PROTEIN 1 29 - -
Lja1g3893 151 PANTHER LIPID TRANSFER PROTEIN 35 151 - -
Lja1g3893 151 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 72 151 IPR036312 -
Lja1g3893 151 CDD HPS_like 69 150 IPR027923 -
Lja1g3893 151 Pfam Hydrophobic seed protein 69 151 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3893 Lja-Chr1 49086928 49087608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3893 67 151 Acyl Lipid Metabolism Gene Families AT4G22490 37.647 1.90e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3893 - - gsj:114414965 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3893 1 49086928 49087608 Lja1g3893 1 49086928 49087608 ECH
Lja5g2854 5 56133319 56134313 Lja1g3893 1 49086928 49087608 PCT