Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2845 ATGGATCTGATCATCCTTTCGCCTGCAGATGGGCTTGAAGTGGTCCACCAAAATGGTGTTCATGATGAACCTTCTAATTATGGGGAGGATTGTGTTGTTTCAAATGACGTAGACTCCAGTGCTACTGAAACTTCAGAAACCGTTTCTCCAAATGGAAATGTTGAAGAAAATTTCAACCAGTCAGACAGCGCTGCACCTGGTAACTCATCTATAGCGGAAATTGAAGGATCAAATAGCAACATGGATAGCAAAAATATGACAATTGCTTTGGAAGAAGTGAAAATAACAGATCAAACAGAACAACCAAGAGCACCAAAGGGTCTGGTCAAGAATAAGAATGCGAAGGCGCCAAGTTCTAGTGGAGTTCATGCAAGTTTGACGAAAAGGAGCAAAAATGGAAAAGATAAACAGCCATCATCTGCGGTTTCAAATGTTACATTGGCCTTAGACTCTCGCCCAAGACAGTCTATTAAAGGTAGACCATTCAACGACCGGCAATCTGAAATGGCCAAGCACTCTTCAACGTCTGATGGAGCATCTTCTGAAGTTACAACGGCGAAGAAAAAACCAAAATCATTGAATAAAGGACCCATTGATAAAGTTCAAAGAGAAGCAGAATCTTCTTCTGGGGACACAGAAGATGCCAAACCTCGTAGGCTGGGGACGCTTCCAGATTATGGTTTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGAAAAGAGTTCTACACTAAGCTTGAGGAAAAGATTCAGGCAAAGGAGGCGGAGAAGACAAACATGCAAGCCAAAAGCAAGGAGACCCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTCTAACGTTTAAAGCAACTCCGATGCCTACTTTCTACCAGGAGCCTCCACCCACTAAGGTGGAGCTAAAGAAGATACCAATTACAAGACCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTTCGGCGACTTCAGAATCAGATGGAAACACTAGCAGCAGTTCTCAACAAGGTCGTTTAAGTCTTGATGAGAAAGTGTTGCGGAGTAACCTTAGTAAAGGAGTAACTCCTGTTCATCATAAGAAACCACAACGAAGATCTCTACCTCCTCGGTTGGCTTGTGCAAAGACCAGTTCATCCAACTCAACAGCTTCACCTACTTCATCCAAGGCAGTCCATGATGCAACAAAGAAAGATATCAGCTTCTCCGATGCTACAGGGGAAGAGAAAATTGAGATCACTCCGCCGTGTGTAGCGAGACGAGTGACGCTCTACCACTGA 1272 0.4363 MDLIILSPADGLEVVHQNGVHDEPSNYGEDCVVSNDVDSSATETSETVSPNGNVEENFNQSDSAAPGNSSIAEIEGSNSNMDSKNMTIALEEVKITDQTEQPRAPKGLVKNKNAKAPSSSGVHASLTKRSKNGKDKQPSSAVSNVTLALDSRPRQSIKGRPFNDRQSEMAKHSSTSDGASSEVTTAKKKPKSLNKGPIDKVQREAESSSGDTEDAKPRRLGTLPDYGFSFKCGERAERRKEFYTKLEEKIQAKEAEKTNMQAKSKETQEAEIKMLRKSLTFKATPMPTFYQEPPPTKVELKKIPITRPKSPKLGRKKSSATSESDGNTSSSSQQGRLSLDEKVLRSNLSKGVTPVHHKKPQRRSLPPRLACAKTSSSNSTASPTSSKAVHDATKKDISFSDATGEEKIEITPPCVARRVTLYH* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2845 423 MobiDBLite consensus disorder prediction 113 127 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 19 229 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 157 171 - -
Lja5g2845 423 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 395 - -
Lja5g2845 423 Pfam Targeting protein for Xklp2 (TPX2) domain 228 298 IPR027329 -
Lja5g2845 423 MobiDBLite consensus disorder prediction 188 220 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 285 393 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 32 86 - -
Lja5g2845 423 Coils Coil 243 270 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 136 151 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 172 187 - -
Lja5g2845 423 MobiDBLite consensus disorder prediction 370 388 - -
Lja5g2845 423 PANTHER PROTEIN WVD2-LIKE 4 1 395 IPR044833 GO:0008017
Lja5g2845 423 MobiDBLite consensus disorder prediction 315 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2845 Lja-Chr5 55967330 55970057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2845 - - lja:Lj5g3v2180070.2 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2845 5 55967330 55970057 Lja5g2845 5 55967330 55970057 ECH
Lja5g2845 5 55967330 55970057 Lja1g3880 1 48949406 48953765 PCT