Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3880 ATGGATCACAGTAACCTTGATCACGAGGATGGACTTCAAGCAGTCCATCAAAACGGCGGTCGTGAAGAGCAGCCTAATTTTGTTGAGGATGGTGTTGTTTCAAATGGAGACTCCGTTGTAGCTGAAATATCAGAAACTGTTATCCCAAATGGAAGCTTTGGAAATTTCAACCAGTTGGATAGCACTGCAACTGATAACTTATCTATGACAGAAATCAAGGAAGGATTAGATGACACAATATATGGAAACAATGTCTCCATTTCTAAGGAAGAGGAAGTGGAGATCGTAGATGAAACGGAGCAAGCGAGAGGACCAAAGGGTCCTGCCAAGAATAAGAATGCAAAGCCACCGGGTCCTAGAGGCGTTCATGTAAGTTCATTAAAAAAGAGCAAAGATGGAAAAGAGAAAGAGGCAGCATCTGCTGTTTCAAATGGTACTTTAGCTGTGGACTCTCATAAAAGACAGCCAATTAAAACCAAATCATTTAATGACAAGCAGACTCGATTGTCCAAGCACCCTGGAAAGTCGGATGCAGCATCTTCTGAAGCACCAGTGGAGAAGACCAGGCCTCAACTATTGAAGAAAGGGCCTCTTGATAATCAAGGAAAAGAAGAACCTTCTTCTCCTACTGCAGAAGATGACAAACCTGGCAGGGCAGGGGCACTTCCAAATTATGGATTCAGTTTCAAGTGTGATGAGCGAGCTCAGAGAAGAAGAGAGTTTTACTCTAAGCTTGAGGAAAAGATTCATGCAAAGGAAGTAGAGGAGAGTACCATACAAGCAAAAACCAAGGAGTCCCAAGAAGCTGAGATTAAGAAGCTTAGGAAAAAGTTAGCATTTAAAGCAACACCAATGCCAAGCTTCTACCAGGAGCCTCCTCCTCCTAGGGTGGAGTTAAAGAAGATACCCACTACAAGAGCTAAATCTCCCAAGCTTGGTCGTAATAAAAGTTCAACCGAAGGAAACACTAACAGCAGTGCTCGACAAGTCCGCGCAAGTCTGGATGAGAAAGTGTTTCAGAATAACCCCACCAAAGGAATTAATCCTGTTCAACAAAAGAAGCCACTACGGAGATCTCTTCCTCCTCGACTGACTGCCGAAAGGATCAGTTCATCCAAACCAGCAACTGTGAGGACTTCATCTAAGGCAGTGAATGGTGAGAAAACCTTGTCCAATTCAACAGGGGAAGAAAAAGTTGAGATGATTGCAGCCACTGATGAGAACAACAGTGCCTTGTCCAATGAGACGAGCGAAGCTCTGCCTCTGAATGTAGAAACCGTTGAAGTGCAGCCTCACGTGAATCATGAGATCGTCATTGAAGAGAAACCACTGGTAGCCTCGGTGCAAGAATCCATAGCGGCCGAGCATTAA 1371 0.442 MDHSNLDHEDGLQAVHQNGGREEQPNFVEDGVVSNGDSVVAEISETVIPNGSFGNFNQLDSTATDNLSMTEIKEGLDDTIYGNNVSISKEEEVEIVDETEQARGPKGPAKNKNAKPPGPRGVHVSSLKKSKDGKEKEAASAVSNGTLAVDSHKRQPIKTKSFNDKQTRLSKHPGKSDAASSEAPVEKTRPQLLKKGPLDNQGKEEPSSPTAEDDKPGRAGALPNYGFSFKCDERAQRRREFYSKLEEKIHAKEVEESTIQAKTKESQEAEIKKLRKKLAFKATPMPSFYQEPPPPRVELKKIPTTRAKSPKLGRNKSSTEGNTNSSARQVRASLDEKVFQNNPTKGINPVQQKKPLRRSLPPRLTAERISSSKPATVRTSSKAVNGEKTLSNSTGEEKVEMIAATDENNSALSNETSEALPLNVETVEVQPHVNHEIVIEEKPLVASVQESIAAEH* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3880 456 MobiDBLite consensus disorder prediction 153 172 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 90 105 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 310 349 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 249 277 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 90 228 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 365 396 - -
Lja1g3880 456 PANTHER PROTEIN WVD2-LIKE 5-RELATED 1 443 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g3880 456 PANTHER PROTEIN WVD2-LIKE 4 1 443 IPR044833 GO:0008017
Lja1g3880 456 Pfam Targeting protein for Xklp2 (TPX2) domain 227 298 IPR027329 -
Lja1g3880 456 MobiDBLite consensus disorder prediction 188 212 - -
Lja1g3880 456 MobiDBLite consensus disorder prediction 249 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3880 Lja-Chr1 48949406 48953765 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3880 - - lja:Lj1g3v1901630.1 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3880 1 48949406 48953765 Lja1g3880 1 48949406 48953765 ECH
Lja5g2845 5 55967330 55970057 Lja1g3880 1 48949406 48953765 PCT