Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2843 ATGTCTAAAGTCCTCGGCTTTTCTGGAACTGATGATTTTTGCCCTGGGGGGACAATATACACAAACCCCAAGGAAGCAAGTTTCTTCCTGTCTCATGGCCTTCCAGTTGATGTATACTTTCCTGCTCGGAAAAGGTCACGAATCAGTGCTCCATTTGTTTTCAGCAGAGAATGGTTGGAGCAGAAGCAGGAGACATCTATTGAAACTTTGCCAGATGAATGCCTGTTTGAAATCTTCAGGAAGTTGCCAGGTGAAGATAGGAGTGCATGTGCTTGCGTTTCCAAGCACTGGCTTATGCTTCTAAGCAATATTTGCAAGACTGAAATCTGTAGCAACAAAAATGCAAGCTTAGAGAATGAGAGTAAACAGGAAAAAGATGATGAAGAGTTTGGAGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACTGATATTAGACTTGCTGCCATTGCAGTTGGAACTGCATCCCGAGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGGTCGTGGGGTGACTACTCTAGGTCTCAAAGCAGTTGCTCGTGGATGCCCTTTTTTAAAGTCTCTTTCTTTATGGAATGTTTCTACTGTTAGTGATGAAGGCCTAATTGAGATTGCTAATAGTTGTCAACAGCTAGAGAAGCTTGACCTTTGCAAGTGCCCTACAATTTCTGACAAGTCTTTAATTGCAGTTGCAAAGAACTGCCCGAATCTCACTGAGTTATCAATAGAACTGTGTCCAAAAATTGGCAATGAAGGTCTACAAGCCATTGGGAAGTGCTGCTCCAATCTAAGGTCTATATCTATCAAGGACTGCACTGGTGTTGGTGATCAGGGAATTGCTGGCCTGTTTTCTTCAACTTCTTTGGTTCTGTCAAAGGTGAAGCTTCAGGCACTGACTGTTTCTGATCTCTCCATAGCTGTTATTGGGCATTATGGTAAAGCAGTTACAGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTTTGGGTTATGGGTAATGGTAATGGATTGCACAAACTCAAGTCACTTACAATTGCATCCTGCAGAGGTGTAACAGATGTTGGGATTGAAGCTGTAGGAAAAGGTTGTCCAAATCTGAAAAGTGTACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATTTCATTCACCAAGGCTGCTTCATCACTTGAAAACCTACAGTTAGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATTTCTATGGTAAGCTGCTATGGGATCAAAGATCAAAACTTGGTGTTGTCACCCATATCTCCTTGTGAATCACTTCGGTCATTGTCAATCCGTCACTGCCCCGAATTTGGCAATGCTACCCTGTCTGTACTGGGAAAGCTATGCCCTCAGCTTCAACAAATTGAATTGAGTGGACTCAAGGAAGTGACAGATGCTGGGTTACTTCCACTGGTTGAGAGTTGTGAGGCTGGTCTGATCAAAGTTAATCTTCATGGTTGCATAAACCTTACAGACAAAATTGTTTCATACTTGGCTAATCTTCATGGTTGGACTCTTGAGGTTTTGAACGTCGACGGTTGTAAAAATGTCAGTGATGCTAGCTTGATGGCAATTGCAGAACATTGCCAATTACTTTGTGATCTTGATGTTTCCAACTGTGCAATCACTGATGCTGGGATAGCAGCCTTAGCACATGCAGAACAGTTGAATTTGCAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTTCGGACAGGAGCTTGCCGTCTTTGAGAAAATTGGGCCACACCCTTTTGGGACTTAATATCCAGCATTGCAATGCAATCAGCAGCAGCACGGTTGACATGCTTGTGGAATTTCTCTGGAGGTGTGACATTCTCTCATGA 1935 0.4336 MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLEQKQETSIETLPDECLFEIFRKLPGEDRSACACVSKHWLMLLSNICKTEICSNKNASLENESKQEKDDEEFGGEGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIRGSNSGRGVTTLGLKAVARGCPFLKSLSLWNVSTVSDEGLIEIANSCQQLEKLDLCKCPTISDKSLIAVAKNCPNLTELSIELCPKIGNEGLQAIGKCCSNLRSISIKDCTGVGDQGIAGLFSSTSLVLSKVKLQALTVSDLSIAVIGHYGKAVTDLVLNCLPNVSERGFWVMGNGNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEECHRITQFGFFGVLFNCGAKLKAISMVSCYGIKDQNLVLSPISPCESLRSLSIRHCPEFGNATLSVLGKLCPQLQQIELSGLKEVTDAGLLPLVESCEAGLIKVNLHGCINLTDKIVSYLANLHGWTLEVLNVDGCKNVSDASLMAIAEHCQLLCDLDVSNCAITDAGIAALAHAEQLNLQILSLSGCTLVSDRSLPSLRKLGHTLLGLNIQHCNAISSSTVDMLVEFLWRCDILS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2843 644 SUPERFAMILY RNI-like 299 640 - -
Lja5g2843 644 Pfam F-box domain 70 104 IPR001810 GO:0005515
Lja5g2843 644 SMART LRR_CC_2 585 610 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 267 292 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 215 240 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 559 583 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 533 558 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 189 214 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 373 398 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 347 372 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 241 266 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 479 504 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 506 531 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 399 424 IPR006553 -
Lja5g2843 644 SMART LRR_CC_2 453 478 IPR006553 -
Lja5g2843 644 Gene3D Ribonuclease Inhibitor 448 644 IPR032675 -
Lja5g2843 644 Pfam Leucine Rich repeat 348 369 IPR001611 GO:0005515
Lja5g2843 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Lja5g2843 644 Pfam Leucine Rich repeat 559 581 IPR001611 GO:0005515
Lja5g2843 644 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 635 - -
Lja5g2843 644 SMART fbox_2 70 110 IPR001810 GO:0005515
Lja5g2843 644 SUPERFAMILY RNI-like 174 417 - -
Lja5g2843 644 PANTHER UNCHARACTERIZED 17 635 - -
Lja5g2843 644 Gene3D - 60 104 - -
Lja5g2843 644 Gene3D Ribonuclease Inhibitor 253 447 IPR032675 -
Lja5g2843 644 Gene3D Ribonuclease Inhibitor 105 252 IPR032675 -
Lja5g2843 644 SUPERFAMILY F-box domain 60 103 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2843 Lja-Chr5 55948461 55952248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2843 K14515 - gmx:100820247 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2843 5 55948461 55952248 Lja5g2843 5 55948461 55952248 ECH
Lja5g2843 5 55948461 55952248 Lja1g3879 1 48930076 48933628 PCT