Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3879 ATGTCTCAAGTTTTCAGCTTTTCTGGAAATGATGATTTTTACTCTGGGGAGTCTTTATACCCTAATCCCAAGGAAGCGAATCTCTTCTTGTCCCTTGGCCTACAAGTGGAGGCTTACTTTCCTCTGCCGAAGAGGTCTCGCATCGCTGTCCCATTTGGTATCAAAGGAAACTGGTTTGACTTTGAGCAGAAGCAGGAGACGTGTATTGAAACTTTGCCAGATGAATGCCTCTTTGAGATCCTCAGAAGGTTGCCTGCAGGCCAGGATCGGGGCAATTGTATGTCTGTATCCAAGCGCTGGCTTATGCTTCTAAGCAATATTTGCGAGAACGAAATCTGCGGCAACAAAAGTACCGGAAATGAAAATGGTGAGCAGGAGGAGGGTGACCTGGAATTTGGAAATGAAGGATTCCTCACTCGAAGCTTCGAAGGGGAAAAGGCAACAGATGTTAGGGTTGCTGCTATGTCTGTTGGGACTGCCTCTCGCGGAGGACTAGGGAAGCTCGCAATTCGTGGATGCAATTCAGATCGTCCGGTGACTGATGTAGGTCTCAAGGCAATTGCTCATGGATGTCCTTCTCTGAAGATTCTCACTCTATGGTGTATCCCTACCATTAGCGATGAAGGCCTGATTGAGATTGCTAACAGGTGTCACCAATTAGAGAAGCTTGAGCTTGGCCAGTGCCCCAATATTTCCGGCAAGGCTTTTGTTGCAATTGCAAAGAACTGCCCGAGTCTGACCCACTTCTCAATTGAGTCATGTCCTAACATTGGTAATGGAGGTTTACAAGCTATTGGGAAGTGTCCCAATCTAAAGTCTGTATCCATTAAGGACTGTGCTGGGGTTGGTGATCAGGGAATTGCTGGCCTGATATCTTCAGCTTCTTTTGTTCTAGAAAGGGTGGTGCTTGAGTCACTAGCTGTTTCTGATCTCGCACTAGCAGTTATTGGACACTATGGCATTGCAGTTACTGATCTCGTCCTAAATTGCCTCCCTAATGTCAGTGAGAAGGGATTCTGGGTTATGGGCAATGGTCGTGGACTGCAGAAACTAGCAGCACTTGGAATTGTGTCCTGCCATGGAGTAACCGATATCGGCCTTGTTGCTATAGGAAAGGGTTGTCCTAATATGAAAATCTTCCAGCTTCAGAAGTGTGCATTTCTCTCTGACAATGGGTTGGTATCATTCGCCAAAGCTGCTCCATCGATTGAGAGCCTATATTTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTCGGGCTCCTTTTTAACTGTGCTGCGAAACTGAAGGTTCTTAGCCTGGCAAGCTGCTATGGGATCAAGAATCTGAATCTCCGACTGCCTGCAGTACTTCCTTGTGGATCAATTGAGTCATTATCAATCCATGACTGCCCTGGATTTGGTGATGCTACCATTGCTGTACTTGGAAAGTTGTGTCCTCAGCTTGAGCATGTTGAATTGAATGGACTTAGTGGAATCACAGATGCCGGGTTTCTTCCCCTGCTTGAGAGTTCAGGGGCTGGTTTGGTTAATGTTAATCTCAGCGGCTGCACTAAACTGACCGACCAAGTTGTTTTGTCGCTGGTCAAGTTGCATGGATGTTCTCTTGAAGTGCTAAACCTTAATGGTTGTAAGAAAATCAGCGATGCAAGCTTGATCGCAATTGCAGGCAGCTGCCCATTGCTCTCTGATCTTGATGTTTCCAGGTGTGGAATCACCGACACTGGGATTGCTGCACTTGCACATGGGAAGCAGCTCAATCTGAAGGTACTTTCTCTGGCAGGTTGTACATCAGTTTCTAACAAGGGTGTGCGCGCTTTGAAAAAGCTTGGCAGTTCCCTCGACGGATTAAACATCAAGAATTGCAAAGGAATCAGCTACCGCTCACTTGACATGCTTGTGCAAGATCTCTGGTCCTGTGACATCCTCTTCTGA 1938 0.4665 MSQVFSFSGNDDFYSGESLYPNPKEANLFLSLGLQVEAYFPLPKRSRIAVPFGIKGNWFDFEQKQETCIETLPDECLFEILRRLPAGQDRGNCMSVSKRWLMLLSNICENEICGNKSTGNENGEQEEGDLEFGNEGFLTRSFEGEKATDVRVAAMSVGTASRGGLGKLAIRGCNSDRPVTDVGLKAIAHGCPSLKILTLWCIPTISDEGLIEIANRCHQLEKLELGQCPNISGKAFVAIAKNCPSLTHFSIESCPNIGNGGLQAIGKCPNLKSVSIKDCAGVGDQGIAGLISSASFVLERVVLESLAVSDLALAVIGHYGIAVTDLVLNCLPNVSEKGFWVMGNGRGLQKLAALGIVSCHGVTDIGLVAIGKGCPNMKIFQLQKCAFLSDNGLVSFAKAAPSIESLYLEECHRITQLGFFGLLFNCAAKLKVLSLASCYGIKNLNLRLPAVLPCGSIESLSIHDCPGFGDATIAVLGKLCPQLEHVELNGLSGITDAGFLPLLESSGAGLVNVNLSGCTKLTDQVVLSLVKLHGCSLEVLNLNGCKKISDASLIAIAGSCPLLSDLDVSRCGITDTGIAALAHGKQLNLKVLSLAGCTSVSNKGVRALKKLGSSLDGLNIKNCKGISYRSLDMLVQDLWSCDILF* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3879 645 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 636 - -
Lja1g3879 645 Gene3D Ribonuclease Inhibitor 161 256 IPR032675 -
Lja1g3879 645 Gene3D Ribonuclease Inhibitor 257 448 IPR032675 -
Lja1g3879 645 Pfam F-box domain 72 107 IPR001810 GO:0005515
Lja1g3879 645 Pfam Leucine Rich repeat 588 608 IPR001611 GO:0005515
Lja1g3879 645 Pfam Leucine Rich repeat 535 557 IPR001611 GO:0005515
Lja1g3879 645 Pfam Leucine Rich repeat 242 265 IPR001611 GO:0005515
Lja1g3879 645 Pfam Leucine Rich repeat 267 288 IPR001611 GO:0005515
Lja1g3879 645 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Lja1g3879 645 Gene3D Ribonuclease Inhibitor 449 643 IPR032675 -
Lja1g3879 645 SUPERFAMILY RNI-like 177 417 - -
Lja1g3879 645 Gene3D - 62 111 - -
Lja1g3879 645 SUPERFAMILY F-box domain 66 105 IPR036047 GO:0005515
Lja1g3879 645 SMART fbox_2 72 113 IPR001810 GO:0005515
Lja1g3879 645 SMART LRR_CC_2 507 532 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 374 399 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 243 268 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 560 584 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 348 373 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 217 242 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 400 425 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 191 216 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 586 611 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 454 479 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 269 293 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 480 505 IPR006553 -
Lja1g3879 645 SMART LRR_CC_2 534 559 IPR006553 -
Lja1g3879 645 PANTHER UNCHARACTERIZED 16 636 - -
Lja1g3879 645 SUPERFAMILY RNI-like 326 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3879 Lja-Chr1 48930076 48933628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3879 K14515 - gmx:100805418 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3879 1 48930076 48933628 Lja1g3879 1 48930076 48933628 ECH
Lja5g2843 5 55948461 55952248 Lja1g3879 1 48930076 48933628 PCT