Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2835 ATGGGTATGCGAGGGGTTTCGCTATTCGATGACAGAAACGATGGCTTCTTCTCTGTTTCAAATTTGGGGTCTCAATGGAATGTTCAGAATGAAGGTTATCACCACCCTGGTGGTTTATTTGCGAGCATTGGTCAAATGGGTATGGGGTTTGGCCAACAACCAAACGACCCTTCTGCGAATTCCCAAGGTGGCGGCGGTGGCGGCAATGGGATGAGGATTCCCTGCACGGAGTTTTACATTAGGTATGTTCAGTCGGAGGGGAAGGTGAAGATTGTTGGTGTTCCTGATGAGGATGATGATGATGATGATGATGATGATGATGAAGAAGAGGTGGTGGGAGGGGTTAGGAGGATGAAGAAGAAGAAGAGGGGTTTGAAGATTAAGGTGAAGAACCCTTCGTTGAGGAGGTTGTTTAGTGGGGCCATTGCGGGGGCGGTGTCGCGTACCGCGGTGGCGCCGTTGGAGACGATAAGGACTCATTTGATGGTTGGGAGTAGTGGCCATTCCAGTGGTGAGGTGTTTAATAATATCATGAAGAGTGATGGGTGGAAGGGGTTGTTTAGGGGCAATTTTGTTAATGTCATACGTGTTGCACCTAGCAAGGCCATTGAGCTTTTTGCTTATGACACAGTTAACAAGAACCTTTCACCAAAGCCTGGGGAACAGCCCAAACTCCCCGTTCCTCCATCACTGATTGCAGGTGCTTGCGCTGGAGTTAGTTCAACTTTATTGACATATCCTCTGGAGTTACTTAAAACTCGATTAACTATCCAGAGAGGTGTTTACGACGGTCTATTTGATGCATTCTTGAAAATCGTTCGAGAAGAAGGTGCTGGAGAACTTTATAGAGGCCTTGCACCTAGTCTTATTGGAGTTATTCCATATTCCGCCACCAATTACTTTGCCTACGATTCTTTAAGGAAAGCATACAGAAAATTTTCCAAACAAGAGAAGATTGGCAACATCGAAACCCTCTTGATAGGATCATTAGCGGGTGCTATTTCAAGTACCGCAACTTTTCCGCTCGAAGTGGCTCGCAAGCACATGCAAGTTGGAGCCCTTAGTGGAAGGCAAGTCTACAAGAATGTGCTTCATGCCCTTGCAAGTATTCTTGAAAAAGAAGGGATCCAGGGTTTGTATAGAGGGTTGGGACCAAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCCTGCAAGAGAATACTGGTAGAGGATGATGATGATGATGAGGAATAG 1254 0.4641 MGMRGVSLFDDRNDGFFSVSNLGSQWNVQNEGYHHPGGLFASIGQMGMGFGQQPNDPSANSQGGGGGGNGMRIPCTEFYIRYVQSEGKVKIVGVPDEDDDDDDDDDDEEEVVGGVRRMKKKKRGLKIKVKNPSLRRLFSGAIAGAVSRTAVAPLETIRTHLMVGSSGHSSGEVFNNIMKSDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPVPPSLIAGACAGVSSTLLTYPLELLKTRLTIQRGVYDGLFDAFLKIVREEGAGELYRGLAPSLIGVIPYSATNYFAYDSLRKAYRKFSKQEKIGNIETLLIGSLAGAISSTATFPLEVARKHMQVGALSGRQVYKNVLHALASILEKEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVEDDDDDEE* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 149 163 IPR002067 GO:0055085
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 328 350 IPR002067 GO:0055085
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 189 209 IPR002067 GO:0055085
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 136 149 IPR002067 GO:0055085
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 282 300 IPR002067 GO:0055085
Lja5g2835 417 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Lja5g2835 417 Gene3D Mitochondrial carrier domain 128 413 IPR023395 -
Lja5g2835 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 309 IPR018108 -
Lja5g2835 417 Pfam Mitochondrial carrier protein 225 312 IPR018108 -
Lja5g2835 417 Pfam Mitochondrial carrier protein 132 215 IPR018108 -
Lja5g2835 417 Pfam Mitochondrial carrier protein 319 410 IPR018108 -
Lja5g2835 417 MobiDBLite consensus disorder prediction 92 111 - -
Lja5g2835 417 MobiDBLite consensus disorder prediction 96 110 - -
Lja5g2835 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 319 407 IPR018108 -
Lja5g2835 417 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 32 413 - -
Lja5g2835 417 SUPERFAMILY Mitochondrial carrier 132 403 IPR023395 -
Lja5g2835 417 MobiDBLite consensus disorder prediction 49 70 - -
Lja5g2835 417 MobiDBLite consensus disorder prediction 49 65 - -
Lja5g2835 417 PANTHER SOLUTE CARRIER FAMILY 25 32 413 - -
Lja5g2835 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 214 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2835 Lja-Chr5 55856321 55859922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2835 1 414 Organic Solute Cotransporters AT4G32400 64.493 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2835 K14684 - gmx:100816041 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2835 5 55856321 55859922 Lja5g2835 5 55856321 55859922 ECH
Lja5g2835 5 55856321 55859922 Lja1g3868 1 48771963 48775689 PCT