Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3868 ATGGGTAGGAACAAAATCCAACTATTTGATGACAAACGAGATGGGTTTTTCTCTGTCTGCGATTTGGGGTACCATCATCCCGGAGGCTTGTTCGCCAGCGTTGGTCAAAGGGGAATGGGGTTCGGTGATGTGCAACCCAACAACCCTTCTGATTCCCGGAACAACAATGGTGGATTGAAACTTCCCTTTAACGATTTGTATGCAAAGTATGTTCAGTCACTGGGGAAAGTTGAGATTGTTGATGATGATGGAGTTAAGGTTAAGAAGAAAAAGGGTGGCTTTGCTCTCAGAATTAAGATCAGGAATCCTTCTATCAGGAGGTTGTTTAGTGGGGCCGTTGCTGGGGCGATTTCGCGGACCGCGGTGGCGCCTTTGGAGACTATAAGGACTCATTTGATGGTGGGAAGTAGTGGCAGTTCTACCTCTGAGGTGTTCCAGAATATTATGAAGATTGATGGTTGGAAGGGGTTGTTTAGGGGTAATCTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTTGCTTTCGATACAGTAAACAAGAACTTATCACCTAAGCTTGGGGAGCAGTCCAAATTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACTATATGCACATATCCTCTTGAATTACTTAAGACTCGACTAACTATCCAGAGAGATGTTTACAATGGTCTACTTGATGCCTTTGTGAAAATAATTCGAGAAGAGGGTCCTTCAGAACTTTACAGAGGCCTCACTCCTAGTCTTATTGGAGTCATTCCATATGCTGCCACCAATTACTTCGCGTACGACACTTTGCGAAAAACATACCGGAAAGTTTTCAAACAAGAGAAGATTGGTAACTTTGAGACCCTTTTGATTGGTTCAGCAGCTGGTGCTATTTCAAGCACTGCAACTTTTCCGCTCGAGGTGGCTCGCAAGCATATGCAAGTGGGAGCTCTCAGTGGAAGACAGATTTATAAAAATGTGGTTCATGCACTTGTAAGCATACTAGAACAAGAAGGGATCCAAGGGTTATATAGAGGGCTGGGACCTAGTTGCATGAAGTTGGTGCCGGCCGCCGGAATCTCTTTCATGTGTTATGAAGCATGCAAGAGCATTTTGATAGATGATGATGAGAAGCAATAG 1161 0.4462 MGRNKIQLFDDKRDGFFSVCDLGYHHPGGLFASVGQRGMGFGDVQPNNPSDSRNNNGGLKLPFNDLYAKYVQSLGKVEIVDDDGVKVKKKKGGFALRIKIRNPSIRRLFSGAVAGAISRTAVAPLETIRTHLMVGSSGSSTSEVFQNIMKIDGWKGLFRGNLVNVIRVAPSKAIELFAFDTVNKNLSPKLGEQSKFPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRDVYNGLLDAFVKIIREEGPSELYRGLTPSLIGVIPYAATNYFAYDTLRKTYRKVFKQEKIGNFETLLIGSAAGAISSTATFPLEVARKHMQVGALSGRQIYKNVVHALVSILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKSILIDDDEKQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3868 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 185 IPR018108 -
Lja1g3868 386 SUPERFAMILY Mitochondrial carrier 103 374 IPR023395 -
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 211 229 IPR002067 GO:0055085
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 299 321 IPR002067 GO:0055085
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 107 120 IPR002067 GO:0055085
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 253 271 IPR002067 GO:0055085
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 160 180 IPR002067 GO:0055085
Lja1g3868 386 PRINTS Mitochondrial carrier protein signature 120 134 IPR002067 GO:0055085
Lja1g3868 386 Pfam Mitochondrial carrier protein 104 186 IPR018108 -
Lja1g3868 386 Pfam Mitochondrial carrier protein 289 381 IPR018108 -
Lja1g3868 386 Pfam Mitochondrial carrier protein 197 283 IPR018108 -
Lja1g3868 386 Gene3D Mitochondrial carrier domain 100 384 IPR023395 -
Lja1g3868 386 PANTHER SOLUTE CARRIER FAMILY 25 21 385 - -
Lja1g3868 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 196 280 IPR018108 -
Lja1g3868 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 378 IPR018108 -
Lja1g3868 386 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 21 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3868 Lja-Chr1 48771963 48775689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3868 1 385 Organic Solute Cotransporters AT4G32400 68.782 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3868 K14684 - qsu:111999876 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3868 1 48771963 48775689 Lja1g3868 1 48771963 48775689 ECH
Lja5g2835 5 55856321 55859922 Lja1g3868 1 48771963 48775689 PCT