Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2817 ATGCTCAAGCAATCCTTCAACAAGCTTCTCCGGAAGTCGTCGAAACCCGACCCGGACGAGTTGGCTCGGAGCGACTCGTTGCGTTCCACTGACTCGCCACGCACCGCCGGGAGAAGCCAGCGGCCGCCTGGTGGGAGTTCTTCCGCTCGAGCAAACGCCACGAAACGAGCTTCGTCGTCGGCGGTGTTCCCGGCGAGTATGGTGTCTGGGATAGAGCCTTTGGTGCCGTTTAAGGACGTTCCTAGTGCTGAGAAGATGAACCTGTTTGTGAGCAAGTTGAGTCTTTGTTGTGTGACGTTTGATTTCACTGACCCTGGTAAGAATGTGGCGGATAAAGATGTAAAAAGGAAAACTTTGGTTGAACTTGTTGATTTTGTGGCTTCTGGGTCAATGAGATTTAGTGAGCCTGCTATGTTTGCTATGTGTAGAATGTGTGCTATTAATCTGTTTAGAGTTTTCCCACCTAATTATAGTGCTAACGGGGGCGGTGCCGGTGGTGGTGAGAATGATGATGATGACCCAATGTTTGATCCTTCATGGCCACATTTACAACTTGTGTATGAATTGCTGCTTAAATTTATCTCGTCTTCGTGCCTTGATGCTAAGTTAGCGAAGAAGTATATCGATCATTCGTTTATTTCCAGATTGCTTGAATTGTTTGAATCGGAGGATCCTAGAGAAAGAGATTGCTTGAAGACAATTCTGCATAGGATTTATGGGAAGTTCATGGTGCATAGGCCCTTCATTCGCAAATCTATTAACAACATATTTTATCGATTTGTGATTGAGACTGAGAGACACAATGGGATTGGTGAGCTGTTGGAGATTTTTGGGAGTGTGATTAGTGGGTTTGCTTTACCCTTGAAAGAGGAGCACAAAATCTTCTTGTGGAGAGTTTTGATCCCCTTGCACAAGCCTAAATCTATGGGGGTCTACTTTCAGCAATTGTCCTTCTGTGTTACGCAGTTTATAGAAAAGGAGCCAAAGTTAGCAAGCGTTGTGATAAGTGGTTTGTTAAAATATTGGCCAGTAACAAATAGCCAGAAAGAGGTGATGTTTCTGGGTGAACTGGAAGAAATTTTAGAATCAATTAACATGGTAGAGTTCCAGAGGATCATGGTCCAGTTGTTTTGGCGGATTGGGTGCTGCATTAACAGCTTGCACTTTCAGGTAGCTGAAAGGGCCCTTTTCTTATGGAACAACGACCACATTGTCAACTTGATTGCGCATAACCGTCAAGTTATCCTGCCCATCATATTTCCAGCTCTAGATAGGAATATTCAAAGCCACTGGAACCCAGCAGTTGTCAACTTAACTCATAATATTAGAAAAATGTTCTTGGAGATGGATGAGAAGCTCTTCATTTCTTGCCATTCTAACTACAAGGAGGAAGAAGTGCTTTTAAGCTCAGCAGCCGAGAAGCGAAAGGAGGCATGGAAACTTCTTGAGCATGCTGCAAGTCTCAAGCCTGTAATTGGAAATACTGCTGTTTTAGTGACTCCTTTGATGACCTGA 1515 0.4422 MLKQSFNKLLRKSSKPDPDELARSDSLRSTDSPRTAGRSQRPPGGSSSARANATKRASSSAVFPASMVSGIEPLVPFKDVPSAEKMNLFVSKLSLCCVTFDFTDPGKNVADKDVKRKTLVELVDFVASGSMRFSEPAMFAMCRMCAINLFRVFPPNYSANGGGAGGGENDDDDPMFDPSWPHLQLVYELLLKFISSSCLDAKLAKKYIDHSFISRLLELFESEDPRERDCLKTILHRIYGKFMVHRPFIRKSINNIFYRFVIETERHNGIGELLEIFGSVISGFALPLKEEHKIFLWRVLIPLHKPKSMGVYFQQLSFCVTQFIEKEPKLASVVISGLLKYWPVTNSQKEVMFLGELEEILESINMVEFQRIMVQLFWRIGCCINSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLEMDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAASLKPVIGNTAVLVTPLMT* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2817 504 MobiDBLite consensus disorder prediction 1 56 - -
Lja5g2817 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 499 - -
Lja5g2817 504 MobiDBLite consensus disorder prediction 28 56 - -
Lja5g2817 504 MobiDBLite consensus disorder prediction 10 27 - -
Lja5g2817 504 SUPERFAMILY ARM repeat 87 479 IPR016024 -
Lja5g2817 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 499 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja5g2817 504 PIRSF PP2A_B56 3 500 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja5g2817 504 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 486 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja5g2817 504 Gene3D - 81 485 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2817 Lja-Chr5 55513297 55517286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2817 K11584 - gmx:100781390 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2817 5 55513297 55517286 Lja1g3833 1 48384193 48387202 PCT