Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3833 ATGCTGAAGCAATTTCTCAGTAAGCTTCCTCGCAAGGGAGCGAAACCTGACTCGGACGAGTCGTGCCGTGGTGACCCGTCACGCTCTAGCACCTCCCGGGACGATTCGCATCACGCGGCAGGTAGGAACAACCGGTCACATGGCGGCGGCGGAGGCGGGTCCTCTGCGAAACGAACCTCGTCTTCGGCGGTTTTCCCGGCGAGTACCGTGTCGGTGATTGAACCGTTGGTGCCGTTCAAGGAGGTTCACAGCTCGGAGAGGATGAACCTGTTTGTGAGCAAGTTGAGTCTCTGTTGCGTCACGTTTGATTTCACCGACCTTGGTAAGAACACGGTGGAGAAAGATGTGAAGAGGCGAACATTGGTTGAACTTGTTGATTTTGTGTCTTCTGTTGGGTCTGGGAAATTTGTTGAACCTGCTATCCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCGCATTACCGGGCGAACCGGGGTGGTGAGCATGATGATGATGAACCGGTGTTCGATCCCGCTTGGCCTCATTTGCAGCTTGTGTATGAATTGCTGCTTAAATTTATTACATCTTCATGCCTTGATGCCAAGGTGGCCAAGAAGTATTTCGACCATTTGTTTATTTCTAGGTTGCTCGAGTTGTTTGATTCGGAGGATCCTAGGGAAAGGGATTGTTTGAAAACAATTCTGCATAGGCTTTATGGGAAGTTCATGGTGCATAGACCCTACATTCGAAAATCTATGAACTATGTGTTTTATAGGTTTGTGTTTGAGACTGAGAAACACAATGGGATTGCTGAGTTGTTGGAGATTTTCGGGAGCGTAATTAGCGGGTTCGCTTTGCCCTTGAAAGAGGAACACAAGATCTTCTTGTGGAGAGTTTTGATTCCCTTGCACAAGCCAAAGTCTTTGGGGGTGTACTTCCAACAATTGTCATACTGTGTTATGCAGTTTATAGAGAAGGAGCCCAAGTTAGCGAGCATTGTGATTAGGGGTTTGTTGAGATTTTGGCCAATAACATATAGTCAGAAAGAGGTGATGTTCCTGGGTGAGCTGGAAGAAATATTGGAAGCAATTAACATGGTAGAGTTTCAGAGGATCATGGTCCCATTGTTTTGGCGGATTGGATGCTGCATTAGCAGTTTGCACTTTCAGGTAGCTGAAAGAGCCCTTTTCTTATGGAACAACGACCATATTGTCAACTTGATTGCGCACAACCGTCAGGTGATCCTGCCCATCATACTTCCAGCTTTAGAAAGGAATTCTCAAAACCACTGGAACCCGGCAGTGTTCAACTTAACACACAATGTCAGAAAGATGTTCATGGAGATGGATGAGAAGCTGTTCCTGTCTTGTCATTCTCAGTTTAAGGAGGAAGAAGAAATGCTAAACTCGGAAGCCGAGAAGCGGAAGGAAGCCTGGAAACAACTAGAGCATGCAGCCAGTCTCAAGCCTGTAGTTGGAAATACTGCTGTTTTAGTGTCTCCTATTTGA 1506 0.4655 MLKQFLSKLPRKGAKPDSDESCRGDPSRSSTSRDDSHHAAGRNNRSHGGGGGGSSAKRTSSSAVFPASTVSVIEPLVPFKEVHSSERMNLFVSKLSLCCVTFDFTDLGKNTVEKDVKRRTLVELVDFVSSVGSGKFVEPAILAMCRMCAINLFRVFPPHYRANRGGEHDDDEPVFDPAWPHLQLVYELLLKFITSSCLDAKVAKKYFDHLFISRLLELFDSEDPRERDCLKTILHRLYGKFMVHRPYIRKSMNYVFYRFVFETEKHNGIAELLEIFGSVISGFALPLKEEHKIFLWRVLIPLHKPKSLGVYFQQLSYCVMQFIEKEPKLASIVIRGLLRFWPITYSQKEVMFLGELEEILEAINMVEFQRIMVPLFWRIGCCISSLHFQVAERALFLWNNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHSQFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLVSPI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3833 501 Coils Coil 461 481 - -
Lja1g3833 501 PIRSF PP2A_B56 6 498 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja1g3833 501 MobiDBLite consensus disorder prediction 10 42 - -
Lja1g3833 501 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 499 - -
Lja1g3833 501 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 78 485 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja1g3833 501 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 499 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja1g3833 501 MobiDBLite consensus disorder prediction 1 60 - -
Lja1g3833 501 SUPERFAMILY ARM repeat 89 481 IPR016024 -
Lja1g3833 501 Gene3D - 84 484 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3833 Lja-Chr1 48384193 48387202 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3833 K11584 - gmx:100808283 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2817 5 55513297 55517286 Lja1g3833 1 48384193 48387202 PCT