Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2801 ATGGGTGAAGAGAAGGAAACTAGTGCTGCTGCTGCTACTAATACTGATACTACGAAGAAGAAGCAGAGGAAGGGTTTGATTTCACGAATTTGGAACGTGATTTTTAGGTCCAATGGAAATGATTTGGAGAAGAGGCTACAGCATTTATCCAAAGCAGAAGCTTCTGTTATGAATAAAATCGCCAACAGGTCCCGCTTCCGTAGCCGAATCTTGCGCAACCTTATTCTGTTTTCTGTTCTATTTCAGGTCATTGCTGTAGTTTATGCTACTATGACAACAAGATCCGTGGGTATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCTTATCATCTGCTGCGTATTCCTTCTTTGTCAGCTTCATACGGATGTGTGATCGCAGGGACCAAAAAACTCTTGAAACACTGAGAGCTGAAAGGCAGGCAAAAATTGACGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACAACTCATTCAGAGATATGACACAGACCCAGCAGCAAAGGCAGCTGCTGCTACTGTTTTGGCATCTAAGTTGGGTGCGGATTCGGGCTTGAAAGTGCATGTGAGAGATGAATCTATGTCTAGCGCTCCAACAGGGACGACCAACGATGCTGAGCATGTGCAGTCTAGTGGACTTCGAAGTTGCAAACAAGTGCACTCTAGATCCACTAGTCCAGGGACAACTGCCCCAAATTATTCTGATCAGCAATTAGTTGGCTCTGGGGGAGTTAACCTAAGTCATACAGTGCAAAATGAGCTTGTAGTTGTTGGACATCATAAACCTCAAAGTTCAACGCATAATGGAGGATGGATTGCTAGAATTGCAGCATTGCTTGTAGGTGAGGATCCAACACATTCTTATGCACTCATATGTGGGAACTGCCATATGCATAATGGTCTTGCTCGGAAAGAGGAATTCCCGTTTATCACTTACTACTGCCCACACTGCCATGCCCTGAACAAACCAAAGCAGTCGGGTGAGCAAATCTCCGGTTTTAATTCCCCAAAAGCAGATAATGGTGAGGCAGATAGGAATCCTAGTGCTTGTGCAGCTGACAAATTAATGAGAAGCAATAATCCGGTAAATACCAGCCCTGAGACCGAGAAGAATCTGTAG 1143 0.4401 MGEEKETSAAAATNTDTTKKKQRKGLISRIWNVIFRSNGNDLEKRLQHLSKAEASVMNKIANRSRFRSRILRNLILFSVLFQVIAVVYATMTTRSVGMNWKMRAIRVLPMFLLPALSSAAYSFFVSFIRMCDRRDQKTLETLRAERQAKIDELKEKTNYYITQQLIQRYDTDPAAKAAAATVLASKLGADSGLKVHVRDESMSSAPTGTTNDAEHVQSSGLRSCKQVHSRSTSPGTTAPNYSDQQLVGSGGVNLSHTVQNELVVVGHHKPQSSTHNGGWIARIAALLVGEDPTHSYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKQSGEQISGFNSPKADNGEADRNPSACAADKLMRSNNPVNTSPETEKNL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2801 380 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 10 378 - -
Lja5g2801 380 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g2801 380 MobiDBLite consensus disorder prediction 333 380 - -
Lja5g2801 380 MobiDBLite consensus disorder prediction 201 250 - -
Lja5g2801 380 Coils Coil 136 156 - -
Lja5g2801 380 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 279 329 IPR019273 -
Lja5g2801 380 MobiDBLite consensus disorder prediction 365 380 - -
Lja5g2801 380 MobiDBLite consensus disorder prediction 202 250 - -
Lja5g2801 380 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 10 378 IPR040115 GO:0071786
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2801 Lja-Chr5 55310165 55314387 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2801 K23292 - gmx:100815496 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2801 5 55310165 55314387 Lja1g3808 1 47928974 47933474 PCT