Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3808 ATGGCTGATGATGATAAAGCAGTTGGGGAAGGTGGTGAGAAGAAAGAGACGAGTCCTACTGCTGCCGGTGCCGGTGGCGATGGAAAGAAGAAGCCCAAGGGATTCTTTTCCCGGATTTGGAATGGTATATTTAGGTTACATGGTGATGATTTTGAGAAGAGACTTCAACACATTTCTAAAGAGGAAGCTACTGTTATGTCTAGAATGAGCAAGAGATCGCGAACATGGAGACGAATGTGCCGCAATCTTATTATATTTTCTGTTATATTTGAGGTCATTGCTGTAAGTTATGCTATTATGACAACAAGATCAGTGGATATGAATTGGAAAATGAGGGCAATCCGGGTTTTGCCTATGTTTCTTTTGCCTGCACTATCATCTGCTGCGTATTCAGGATTTGTCAGCTTCACCAAAATTTGTGATCGCAGGGACCAGAAAATTCTTGATAGGCTTCGAGCTGAAAGGCAAGCAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACTCTACACAACAGCTCATTCAGAGATATGACACTGACCCAGCTGCAAAGGCAGCTGCTGCAACTGTTTTGGCATATAAGTTGGGTGCAGATTCTGGTTTGAAAGTGCATATGGGAGATGAATCCAAACCCAATTCTGCAACGGGGAAGAGCAATGATATTGAACTTGTGCAGTCTACTGGACTTCGAAATCGGAAACAAGTTCACTCTAGTCCAGGGACAACCACAACAAATTTTGATGAGCAACAATTAGTAGATTCTGGGGGGATTGATCAAACTCAGACCTCTGAGTACAATCAGCTTGTTGTTGTTGAACATCAACATCCTCAAAGCTCCACCGCGCAAGATGGAGGATGGATTGCACGGATTGCAGCGTTGCTTGTGGGTGAGGATCCAACTCAGTCTTATGCTCTCATATGCGGTAACTGCCATATGCATAATGGTCTAGCTCAGAAGGAGGATTTCCCATTTATCACTTACTATTGCCCGCACTGTCACGCGCTGAACAAACCAAAGAATTTGCATTTGGATGAGCGTATCTCTGGTCTTGCATCCCCAAACACGGTGTCTCCGAAAACAGACGATGGTGGGGCAGTTAAAAGTGCTAGCCCTTCTGCTGCTGAGAGCATCATCCCAAGCAATAGCCCTGTAAGTGCTGGCCCGGAAATTGAGGAAATATCAGAAAAAGAAAGTTTTGAGGAGAAAGCTAATTGA 1218 0.4376 MADDDKAVGEGGEKKETSPTAAGAGGDGKKKPKGFFSRIWNGIFRLHGDDFEKRLQHISKEEATVMSRMSKRSRTWRRMCRNLIIFSVIFEVIAVSYAIMTTRSVDMNWKMRAIRVLPMFLLPALSSAAYSGFVSFTKICDRRDQKILDRLRAERQAKIDELKEKTNYYSTQQLIQRYDTDPAAKAAAATVLAYKLGADSGLKVHMGDESKPNSATGKSNDIELVQSTGLRNRKQVHSSPGTTTTNFDEQQLVDSGGIDQTQTSEYNQLVVVEHQHPQSSTAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLAQKEDFPFITYYCPHCHALNKPKNLHLDERISGLASPNTVSPKTDDGGAVKSASPSAAESIIPSNSPVSAGPEIEEISEKESFEEKAN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3808 405 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g3808 405 Coils Coil 148 168 - -
Lja1g3808 405 MobiDBLite consensus disorder prediction 391 405 - -
Lja1g3808 405 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 287 337 IPR019273 -
Lja1g3808 405 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 17 401 - -
Lja1g3808 405 MobiDBLite consensus disorder prediction 232 253 - -
Lja1g3808 405 MobiDBLite consensus disorder prediction 353 405 - -
Lja1g3808 405 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 17 401 IPR040115 GO:0071786
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3808 Lja-Chr1 47928974 47933474 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3808 K23292 - gmx:100797087 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2801 5 55310165 55314387 Lja1g3808 1 47928974 47933474 PCT