Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2786 ATGGAATCCATCTCCCCTAACTGCTTATACGCAGTTCCTCGTCACAAGGCTCTGTCGCCACGAACCTCAATTCCTCACCCTCCATTTCAGCGCAAGAAGAAGGCATGGAGGAAGGGGAGAATCTCAGCTTCCGCCACCACCCAGAACGGCGTCGTTTCCAGGGCGTTGCAGCTTCTCAGCAACTCCAGCAGCAGTGCAATGGAGCAGCTCGACTTCGAGCGTGGCGTCTGCGTCCCTTTCCGCAAGTACTCTCCCGAGACCGTGAGGAATAAAGTATTAGAGTCAAGAGGGGCTATTGTGTCACTTATGTTGCGAGGAGTGGAGATAGTTTGGAGTCTGGGCTTGTACTGGTCTAATTTGACATATGACTTCCTTGTTGGACGGGATGAAGAGGTTGTTCCATATCGTGCTCGACAGCTTAGGAATCTCTTGTGTGATCTGGGACCTTCCTTTATTAAAGCTGGTCAGGTCCTTGCAAACAGGCCAGATATTATTAGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGATGATGTTCCTTCATTTCCCAATCAAATTGCCTTTCGTATCATGGAGGAGGAACTGGGTCAGCCCCTTGAAGCTGTTTTCAGTAGAATCTCATCTGAGACTATAGCAGCTGCAAGTTTAGGTCAAGTGTACCGTGCTACTTTACGTGGCACAGGCGAGGACGTCGCTATCAAGGTTCAAAGACCCGGTATAGAGCCAATAATATATCGAGATCTTTTCCTATTTCGCACTTTGGCTTCATTTTTAAATGGCATTAGTATGCAGAAATTGGGTTGTAATGCTGAGCTGATTGTTGATGAATTTGGCGAAAAGCTTTTGGAAGAGCTGGATTATACCTTGGAAGCTCGAAATCTTGAAGATTTTCTTGAGAATTTTAAAAATGATCCTACTGTCAAAATTCCTCTGGTGTACAAACAATTTTGTGGTCCACGTGTGTTAGTAATGGAATGGATTGACGGCATTAGGTGCACCAATCCAAAGGCCATCAAAGAAGCTGGTCTTGATGTAGACGGATTTTTGACAGTCGGAGTGAGTGCCGCCCTCCGGCAATTGTTGGAATTTGGATTATTTCATGGAGACCCTCACCCTGGAAATATTTTTGCCATGCGTGATGGACGAATTGCATATGTGGATTTTGGCAATGTTGCTGTTCTAAGTCAGCAAAATAAACAGATTTTAATTGATGCTGTTGTCCACGCTGTGAATGAGGATTATGCTGAGATGGCTAATGATTTCACCAGATTAGGCTTCCTAACACCAGGGACTGATGTCACTCCAATAATTCCTGCTTTAGAAGCAATTTGGCAGAACTCTTCTGGAAAAGGGCTTTCAGATTTTAATTTTCGTAGTGTCACTGGAAAGTTTAATCAGTTGGTTTACAATTATCCCATTCGAATCCCAGAAAGGTTTTCGCTTGTTATCCGTTCTTTATTGACTCAAGAAGGCATCTGCTTTACTCTTAAGCCTGACTTCAAATTTCTTGAGGTTGCCTATCCTTATGTGGCAAAGCGACTGTTAACAGATCCAAATCCAGCTCTACGTGAGCGGCTCATACAGGTTCTGTTCAAAGATGGTCTTTTTCAATGGAAACGGCTTGAAAATCTTATTGTTCTTGCAAAGGAAAATGTGACCAAGATGAGCAGCAATCCAGCGTTGCAAGTGAAGAGCACGCAAAACCAGAGGGACCGGAAAGTTGAAAGAAAATTGGACCTCACAGACACAATCAAAGATGGAGCTCGCCTTTTCTTCATTGATGAAGGAATACGTAGACAGCTTCTTCTCGCTTTGACGGAAGACTCCAAGCTTCATATTGAAGAGCTTGTCGACGTGTATAGGTTGGTTGAAGATCAGATAGACATGCCCACAGTGGCTCTAGAAGTAGCTAGAGACTTACCAACGGTTGTCAGGGATCTCCTACTTTCATGGAGTCAGTCAGTCTTATCCGATAGATAG 1983 0.4402 MESISPNCLYAVPRHKALSPRTSIPHPPFQRKKKAWRKGRISASATTQNGVVSRALQLLSNSSSSAMEQLDFERGVCVPFRKYSPETVRNKVLESRGAIVSLMLRGVEIVWSLGLYWSNLTYDFLVGRDEEVVPYRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNQIAFRIMEEELGQPLEAVFSRISSETIAAASLGQVYRATLRGTGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISMQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPLVYKQFCGPRVLVMEWIDGIRCTNPKAIKEAGLDVDGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLTPGTDVTPIIPALEAIWQNSSGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKENVTKMSSNPALQVKSTQNQRDRKVERKLDLTDTIKDGARLFFIDEGIRRQLLLALTEDSKLHIEELVDVYRLVEDQIDMPTVALEVARDLPTVVRDLLLSWSQSVLSDR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2786 660 ProSiteProfiles Protein kinase domain profile. 206 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2786 660 CDD ABC1_ADCK3-like 176 422 - -
Lja5g2786 660 Gene3D Transferase(Phosphotransferase) domain 1 204 407 - -
Lja5g2786 660 Pfam ABC1 atypical kinase-like domain 176 420 IPR004147 -
Lja5g2786 660 SUPERFAMILY Protein kinase-like (PK-like) 177 416 IPR011009 -
Lja5g2786 660 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 32 660 - -
Lja5g2786 660 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 32 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2786 Lja-Chr5 55110447 55118940 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2786 - - gmx:100819754 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2786 5 55110447 55118940 Lja5g2786 5 55110447 55118940 ECH
Lja1g4593 1 60134401 60144122 Lja5g2786 5 55110447 55118940 PCT