Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2780 ATGCTACCCGGGCGGCAGCAGAGCTCGAGAGTCGATTTGGGTGAATTAAAGGCCCAAATTGTGAACAAGGTTGGAGCGGATAAGTCGAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGTTGAGCAAGGCTGAGTTTGATAAGTTATGTTATCGGGTGCTTGGGAGGGAGAACCTTCCATTGCACAATCATTTTATAAGATCAATCTTGAAGAATGCCTGCCAAGCCAAGATACCGCCACCAACCCAGCCATCAGCTCCTCCAAAATTGGGAGCGCATGTTACTAATGTATCTCCCAGTAGAGAAGATGGACATGAGCAGAGTGTTGCTACCTTTCAAAATCAAAGTGCATCGATCTGGTCAAACGGGGTTTTGCCGGTGTCCCCGCGTAAGTTAAGGTCTGGAGTACGCGACCGGAAGCATAAAGATAGACCAAGCCCTCTTGGTCCAAATGGGAAAGTTGATTCTGTTGCTCCTCAATCCACTGCTACAGAGGACAGTGGCACTAGGGTTCACATAGAGAATGGAACTCTCACTCCATGTGATTATCAGAGACCAATACACCATCTGCAAGAAGTTTCTGAGCTACCTAAGAATGGTGAGGGGGGTGCTGTACAGAGACCAGCTAAAAAACCAAGAATATATGGCAAAGGGATGAGCAAAACACCAATTGTTGAAGATGGGGAGGAGGTGGAGCAGTTGAACCGCCTCAGTTTTGCCAGAAGTCCCCTGATAGCACCACTTGGGATTCCTCACTGCTCTGCAAGTGTGGGTGGGGCCCGCAAATCATTGCCAGTGAATAGCGCTAGTGATTTTGTTAGTTTTTGTGACAGTGGTAGTTTACCTGATACAGATACACTGAGAAGGCGCATGGAGCAGATTGCTACTGTACAGGGTCTTGGAGGTGTTTCTATGGAATGTGCAAATATGTTGAATAATGTGTTGGATTCGTACCTGAAAAGGTTGATCAGGTCTTGTGTCGATTTAGTGAGCGCTAGGTCTGCGAATGAGAATGAGCCGACCAAGCTCCCTGTCTCAAAACCGCAGATTCAGGGGAAGATCATGAATGGCATGTGGCCAAACAATCAGTCACATGTGCAGCAGAGTCCTGGTGGGCCGGCAGAGCCTGAACTTGAACACAGACCCCAGATCTCCATATCTTTGCATGATTTTAAAGTTGCCATGGAACTAAATCCACAGCAACTCGGAGAAGATTGGCCACTACAGTTGGAGAAACTTTCTATGCAATCCTTAGAGAAATAA 1272 0.4686 MLPGRQQSSRVDLGELKAQIVNKVGADKSKRYFYYLNRFLSQKLSKAEFDKLCYRVLGRENLPLHNHFIRSILKNACQAKIPPPTQPSAPPKLGAHVTNVSPSREDGHEQSVATFQNQSASIWSNGVLPVSPRKLRSGVRDRKHKDRPSPLGPNGKVDSVAPQSTATEDSGTRVHIENGTLTPCDYQRPIHHLQEVSELPKNGEGGAVQRPAKKPRIYGKGMSKTPIVEDGEEVEQLNRLSFARSPLIAPLGIPHCSASVGGARKSLPVNSASDFVSFCDSGSLPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDSYLKRLIRSCVDLVSARSANENEPTKLPVSKPQIQGKIMNGMWPNNQSHVQQSPGGPAEPELEHRPQISISLHDFKVAMELNPQQLGEDWPLQLEKLSMQSLEK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2780 423 PANTHER TRANSCRIPTIONAL ADAPTER 1 5 422 IPR024738 GO:0070461
Lja5g2780 423 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 5 422 - -
Lja5g2780 423 MobiDBLite consensus disorder prediction 362 381 - -
Lja5g2780 423 MobiDBLite consensus disorder prediction 82 112 - -
Lja5g2780 423 MobiDBLite consensus disorder prediction 133 170 - -
Lja5g2780 423 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 6 333 IPR024738 GO:0070461
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2780 Lja-Chr5 55035611 55038046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2780 - - gmx:100811524 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2780 5 55035611 55038046 Lja5g2780 5 55035611 55038046 ECH
Lja5g2780 5 55035611 55038046 Lja1g3796 1 47797286 47799225 PCT