Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3796 ATGCAACCCCAGCAGAGCTCAAGAATTGATTTGGGTGAATTAAAGGCACACATTGTAAAGAAGCTTGGAGTGGATAAGTCAAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGCTGGCCAAGAATGAGTTTGATAAGTTGTGTTTTCGAGTACTTGGGAGGGAGAATCTTCCGTTGCACAACCATTTTATAAAGTCAATTTTGAAGAATGCCTCCCAAGCAAAGACCCCGCCACCAATCCAACCATCCGGTCCCCTGAAGTCTGTTGATCGTGCTACAGACATATCTCCTGGTAGAGAAGATGGGCATGAACAGAGTGTTGCCAGCTTCCAGAATCAAAATCAAAATGCGACCATATGGTCGAATGGGGTTTTGCCTGTATCCCCACGAAAGGTTAGGTCTGGAATACGTGATCGGAAGTTGAGGGATAGACCAAGCCCTCTTGGACCAAATGGGAAGGTTGATTCTGTTTCTCACCAGTCCATGGGCACAGAAGACAGTGGTAGTAAAGTTGATATGGAGAATGGAATTCTTACTCCATGTGATTATCTGAGACCGACACAGCATCTTCTAGCTGTTGCTGAGCTACCTGAGGATGAAAGGGCGGATGCAGTTCAGCGACCTGCAGAAAAACCAAGAATACACGGCAAAGGGCCAGCAGAAATGTCAATTGTTGAAGATGGGGAAGAAGTGGATCAGTTTAACCGCCTGAATTTCTCTAGAAGTCCCTTGATAGCACCACTTGGGATTCCTTATTGTTCAGCAAGTGTAGGTGGGGCTCGCAAAGCATTGCCAGTGTCTAGCATTGGTGATTTTGATAGTTGCTGTGACAGTGGTTGGTTGTCTGATACAGATACGCTGCGAAGGCGAATGGAGCAGATTACTGCAGTACAGGGTCTTGGAGGTGTTTCCATGGAATGTGCCAATGTGTTGAATAACATGTTGGATGTATACTTGAAACGGTTGATCAGGTCTTGTGTTGAATTAGTGGGAGCTAGGTCCACGAATGATCTGAGGAAGCCCCCTGCCCCCAAACAGCAGATTCATGGTAAGGTCATAAATGGTGTGAGGCCAAGTAATCATCTACACATGCAGAATACTGGTGGGCTGGCAGAGCCTGTGCCTGAACATAGACCACCATGCTCAATTTCTTTGCATGATTTTAAAGTTGCCATGGAGCTAAATCCACAGCAACTTGGAGAAGATTGGCCACTGATGTTGGAGAAAATATCCATGCAATCGTTTGAGAAATAA 1263 0.4545 MQPQQSSRIDLGELKAHIVKKLGVDKSKRYFYYLNRFLSQKLAKNEFDKLCFRVLGRENLPLHNHFIKSILKNASQAKTPPPIQPSGPLKSVDRATDISPGREDGHEQSVASFQNQNQNATIWSNGVLPVSPRKVRSGIRDRKLRDRPSPLGPNGKVDSVSHQSMGTEDSGSKVDMENGILTPCDYLRPTQHLLAVAELPEDERADAVQRPAEKPRIHGKGPAEMSIVEDGEEVDQFNRLNFSRSPLIAPLGIPYCSASVGGARKALPVSSIGDFDSCCDSGWLSDTDTLRRRMEQITAVQGLGGVSMECANVLNNMLDVYLKRLIRSCVELVGARSTNDLRKPPAPKQQIHGKVINGVRPSNHLHMQNTGGLAEPVPEHRPPCSISLHDFKVAMELNPQQLGEDWPLMLEKISMQSFEK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3796 420 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 420 IPR024738 GO:0070461
Lja1g3796 420 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 420 - -
Lja1g3796 420 MobiDBLite consensus disorder prediction 135 149 - -
Lja1g3796 420 MobiDBLite consensus disorder prediction 156 171 - -
Lja1g3796 420 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 4 333 IPR024738 GO:0070461
Lja1g3796 420 MobiDBLite consensus disorder prediction 73 110 - -
Lja1g3796 420 MobiDBLite consensus disorder prediction 134 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3796 Lja-Chr1 47797286 47799225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3796 - - gmx:100819343 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2780 5 55035611 55038046 Lja1g3796 1 47797286 47799225 PCT