Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2766 ATGGTAGGTATCTTCTCGTTGGTTACAGGGATGGCGGGACCAAGTGGATTCGGATCCGCCACAACTGCAGAACAGGTTTCTGAAGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGGGGGAGCAAGTGGTATTGGCTTGGAAACAGCTCGAGTCCTGTCTCTTCGAAAGGTCCATGTTATTATTGCTGCGAGAAACATGAATTCTGCAAAGGAAGCTAAACAACTCATACTCCAGGACAACGAGTCTGCTCGAGTGGACATAATGAAGCTTGACCTTTGCTCACTGAAATCTGTGAGATCATTTGTGGAAAACTTCATCGCTCTTGGCCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTTCCAGCTATCAGAAGATGGGATCGAGATGCAGTTCGCAACAAATCATCTTGGTCATTTTCTTTTGACAAACCTTCTACTTGATAAGATGAAGCAAACCGCAAAAGCCACTGGAATTGAGGGCAGGATCATAAATCTGTCATCAATTGCTCACACCTACACTTATGAAGAGGGCGTTAGGTTTGATGACATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCCAACTTATTACACGCAAATGAGCTTTCTCGTCGCTTGCAGGAAGAGGGTGTCAACATCACAGCCAATTCAGTCCACCCTGGAGTGATAATGACTCCTCTTATGAGACACTCTTCATTTCTTATGAATTTTCTGAAGATGTTCACCTTTTACATATGGAAGAATGTCCCACAGGGAGCTGCCACAACATGCTATGCTGCTCTGCACCCTAGCTTGAAAGGTGTAACCGGGAAGTACTTTCTGGATTGTAATGAGTTTGAACCAAGCGCGCTCGCGTCAAATGAACTCTTAGGAAAGAAACTCTGGGATTTTAGCAACAAGTTGATCAACCAAGTTTCAAAGGAATGA 972 0.4403 MVGIFSLVTGMAGPSGFGSATTAEQVSEGIDASNLTAIITGGASGIGLETARVLSLRKVHVIIAARNMNSAKEAKQLILQDNESARVDIMKLDLCSLKSVRSFVENFIALGLPLNILINNAGVMFCPFQLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKATGIEGRIINLSSIAHTYTYEEGVRFDDINDQIGYSDKKAYGQSKLANLLHANELSRRLQEEGVNITANSVHPGVIMTPLMRHSSFLMNFLKMFTFYIWKNVPQGAATTCYAALHPSLKGVTGKYFLDCNEFEPSALASNELLGKKLWDFSNKLINQVSKE* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2766 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lja5g2766 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lja5g2766 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lja5g2766 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Lja5g2766 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lja5g2766 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lja5g2766 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lja5g2766 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lja5g2766 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lja5g2766 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Lja5g2766 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Lja5g2766 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Lja5g2766 323 Gene3D - 27 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2766 Lja-Chr5 54717497 54721487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2766 17 296 Acyl Lipid Metabolism Gene Families AT3G46170 23.729 1.69e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2766 K11153 - gmx:100807056 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2766 5 54717497 54721487 Lja5g2766 5 54717497 54721487 ECH
Lja1g0940 1 9238596 9240265 Lja5g2766 5 54717497 54721487 PCT