Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0940 ATGGTGTCTGCAAAGAAAGCTAAAGAACAAATACTGCAGGAGAATGAGTCTGCAAGAGTGGACATAATGAATCTCGACCTCTGCTCAGTAAAGTCTGTTAGATCATTTGCGGAAAATTTCAATGCTCTTGATCTTCCTCTCAACATATTAATAAACAATGCTGGAATCATGTTCTGCCCCTTCAAGCGCTCAGAGGATGGGATTGAGATACAGTTTGCAACAAACCATCTTGGCCATTTCCTGCTGACCAACCTTCTTCTTGACAAAATGAAACAAACTGCAAAAGCAACTGGAAAAGAGGGCAGGATCGTAAACCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTTCATAAGATCAATGATCAAAATGGTTATTCTAACAAGAAGGCTTATGGGCAGTCCAAGTTAGCTAACATATTACATGCAAATGAGCTTTCTCGTCGCCTGAAGGAAGAGGGTGTGAACATCACAGCCAACTCAGTCCACCCAGGAGTGATAATGACTCCACTTATGAGACATTCTTCTTACCTTATGCACTTCTTGAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCTATGGAAGGGGTAACTGGGAAGTACTTTGTGGATTGCAATGAGTTTAAGCCAAGCTCATTTGCCAGAAACAAAATTTTAGCAAGGAAACTCTGGGATTTCAGCAACAAGTTGATCGATTCAATTTCAAAAGCTTGA 729 0.406 MVSAKKAKEQILQENESARVDIMNLDLCSVKSVRSFAENFNALDLPLNILINNAGIMFCPFKRSEDGIEIQFATNHLGHFLLTNLLLDKMKQTAKATGKEGRIVNLSSIAHNYTYRKGIRFHKINDQNGYSNKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISKA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0940 242 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 45 56 IPR002347 -
Lja1g0940 242 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 109 IPR002347 -
Lja1g0940 242 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 155 IPR002347 -
Lja1g0940 242 Gene3D - 2 239 - -
Lja1g0940 242 PRINTS Glucose/ribitol dehydrogenase family signature 159 176 IPR002347 -
Lja1g0940 242 PRINTS Glucose/ribitol dehydrogenase family signature 45 56 IPR002347 -
Lja1g0940 242 PRINTS Glucose/ribitol dehydrogenase family signature 95 111 IPR002347 -
Lja1g0940 242 Pfam short chain dehydrogenase 5 115 IPR002347 -
Lja1g0940 242 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 214 IPR036291 -
Lja1g0940 242 PANTHER RETINOL DEHYDROGENASE 3 239 - -
Lja1g0940 242 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0940 Lja-Chr1 9238596 9240265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0940 K11153 - gmx:100801849 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0940 1 9238596 9240265 Lja1g0940 1 9238596 9240265 ECH
Lja1g0940 1 9238596 9240265 Lja5g2766 5 54717497 54721487 PCT