Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2749 ATGAAGACAGAGTTGAAGAAGAAGATATCTAAGTCTTCATGGCCTAAATTGGATGTGAAGAAGTGGCTGAATACCAAGAGTGGCGATGACAAGTTTCAGTCAGATTACTACTCTATAGCAGAGGGGTGGTTGACGGATGCTGCAGCCAATGGAATGAAACATTCGGTAATTGGAAAAGAAGGACCACCACCTGTCACTCACACTGACATGCTCATTAGTAGGATGTTTGTGGGAACATGGAATGTGGGAGGAAAGTCACCAAACGAGGAATTGAACTTGAAGGATTGGTTGATGCTGCCTTCACCAGCTGAAATCTATGTCATTGGGTTCCAAGAAATTATCCCACTAAATGCAGGGAACGTGCTTGGGCCAGAAGACAGTGGCCCAGCAGGGAAGTGGCTGGGACTCATTCGTGAAGCCTTGAACTCTAGCCCAAGTGAGAAGCAACACTATTGCCTAGTAGCAAGCAAGCAAATGGTGGGTATCTTCTTGTGCGTGTGGGTACGAAGGGATATTTACAAGCACGTCACCAATTTAAAACTCTCATGCGTTGGTAGAGGCATCATGGGTTATCTAGGAAATAAGGGCTCAGTATCAATTAGCATGACATTGTACAACAGCACCTTTTGCTTTGTGTGCACCCACTTGGCCTCCGGAGAGAAAGATGGTGATGAGATGCGAAGAAATTTAGACGTATCAGAAATCTTGAAGAAAACTAAATTTTCTCCCTTGTTTCCTCAAACCATTATGGAACATGATAATATTATTTGGCTTGGGGATTTGAATTATCGGCTTGCCGCCGGTTACAATGATACACATGAGCTGCTTAAGAAAAAAAATTGGCCGGCCCTGTTGGAGAAGGATCAGCTAAGAATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAATGGAAAGAAGGGAATATACATTTTGCTCCTACTTACAAATATTTATTCAATTCTGACCAGTATGTTGCCCAAACCTCCAAGTCCAAGCAAAAACGTAGGACTCCGGCATGGTGTGACCGGATTCTGTGGAAGGGGGAAGGCCTTGAGCAATTGTGGTACCAGCGTGGAGAGTCCAAATTCTCAGACCACAGGCCTGTGTATTCACTCTTCTCAGTTCATGTCAACTTAATCTCATCAAGGCCATGCTCATCTAGACCCTTCACAAATGCTGCAGCATCATGTGCTGCAAAAGTTCAGGCAGAGGAGCAGCTCTTGTTGCTAACCAGGGCACAAAAAATTGCATAG 1251 0.4452 MKTELKKKISKSSWPKLDVKKWLNTKSGDDKFQSDYYSIAEGWLTDAAANGMKHSVIGKEGPPPVTHTDMLISRMFVGTWNVGGKSPNEELNLKDWLMLPSPAEIYVIGFQEIIPLNAGNVLGPEDSGPAGKWLGLIREALNSSPSEKQHYCLVASKQMVGIFLCVWVRRDIYKHVTNLKLSCVGRGIMGYLGNKGSVSISMTLYNSTFCFVCTHLASGEKDGDEMRRNLDVSEILKKTKFSPLFPQTIMEHDNIIWLGDLNYRLAAGYNDTHELLKKKNWPALLEKDQLRIEQRAGRVFKEWKEGNIHFAPTYKYLFNSDQYVAQTSKSKQKRRTPAWCDRILWKGEGLEQLWYQRGESKFSDHRPVYSLFSVHVNLISSRPCSSRPFTNAAASCAAKVQAEEQLLLLTRAQKIA* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2749 416 Pfam Endonuclease/Exonuclease/phosphatase family 78 365 IPR005135 GO:0003824
Lja5g2749 416 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 25 148 IPR045849 GO:0004445|GO:0046855
Lja5g2749 416 SMART i5p_5 74 380 IPR000300 GO:0016791|GO:0046856
Lja5g2749 416 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 146 411 IPR045849 GO:0004445|GO:0046855
Lja5g2749 416 Gene3D Endonuclease/exonuclease/phosphatase 65 400 IPR036691 -
Lja5g2749 416 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 146 411 - -
Lja5g2749 416 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 25 148 - -
Lja5g2749 416 SUPERFAMILY DNase I-like 73 377 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2749 Lja-Chr5 54488519 54499832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2749 74 376 Acyl Lipid Metabolism Gene Families AT1G65580 32.222 4.07e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2749 - - gmx:100795297 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0923 1 9099384 9104065 Lja5g2749 5 54488519 54499832 PCT