Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2744 ATGTCTCCGTTTTCTTCAACCTTAGCCATGGAGTCTCTCCCTAAATTGCACCACCCTCACCTCTCCCTCAACCGCCGCCACTTTCCATCAGCACCACCCTTCTCCTCCCTCTCCTTCCGCTCCCAACCACCACCTTCATTCTCTTCTTCCTTCAAATCATCACGTATCAGAGCCTCATCCTCACCCTCACCCAACAACCCTTCTTCTCACAACCGCCAAAACCCTTTCCTCCGAGCCCTCCTTTCACCTTTCCTCGAACCCACCTACATCGCCATAGTCGCAGCCGCATTCTTCCTCTTGCGCCTCCAGCTCAAGCCCGCCAAGGCCACCGCCCCACTCGTACCTCAGCCGCCGCCGGCAGAGTCCGCCACCCTCGAGGAACCCCTACAGAGCGAAGAAGATGAAGAGGAGACAGCCACCATAGAGGAGCGGCTCAGCAACAACCCCGCCGACACCGAGGCGCTACGGTCCCTCGTGGAGGTGAAAGTCAGGGCTCGGAAAATCGACGAGGCGGTTCAGGCCGTGGACCGTTTGATCGAGCTGGAGCCAGAGGAGGTGGAGCTGCTGGTGCTGAAGGCGCATTTGTACAGCCACAACGGCGAGCACGAACTGGCGAGGAACGGGTTCGAGGAAGTGCTGAAGAGAGACCCTTTTGACGCTGAGGCTTATCACGGGCTTCTGAAGGCGACTTCGGAGCTGAACGAGCCAATTGGGGATTTGTTGAAGAGGATTGAAGAGGCAATGAAGCATTGCGAGGCGGAGAAGGATAAGGCTTTTGAAGCGAGGGAGTTTAAGCTCTTGATTGCGCAGATTAAGGTGATTGAGGATGACTATTCTGGTGCTCTGAAGGTGTATCAGGAGCTTGTGAAGGAGGAACCGAAGGATTTTAGACCTTACTTGTGTCAGGGTGTTGTGTATACTCTGCTTAAGAAGAAAGATGAAGCTGATAAACAGTTTGCCATGTACCGAAAACTTCTCCCGAAGGATCATCCTTATAAAGAGTACTTTGAGGACAACACTCAGGTTTTCTCGCAGAAGCTACGCGGAATAGATGCTAAGAGCTGA 1065 0.538 MSPFSSTLAMESLPKLHHPHLSLNRRHFPSAPPFSSLSFRSQPPPSFSSSFKSSRIRASSSPSPNNPSSHNRQNPFLRALLSPFLEPTYIAIVAAAFFLLRLQLKPAKATAPLVPQPPPAESATLEEPLQSEEDEEETATIEERLSNNPADTEALRSLVEVKVRARKIDEAVQAVDRLIELEPEEVELLVLKAHLYSHNGEHELARNGFEEVLKRDPFDAEAYHGLLKATSELNEPIGDLLKRIEEAMKHCEAEKDKAFEAREFKLLIAQIKVIEDDYSGALKVYQELVKEEPKDFRPYLCQGVVYTLLKKKDEADKQFAMYRKLLPKDHPYKEYFEDNTQVFSQKLRGIDAKS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2744 354 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Lja5g2744 354 MobiDBLite consensus disorder prediction 34 72 - -
Lja5g2744 354 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Lja5g2744 354 SUPERFAMILY TPR-like 144 330 IPR011990 GO:0005515
Lja5g2744 354 Gene3D Tetratricopeptide repeat domain 125 262 IPR011990 GO:0005515
Lja5g2744 354 Coils Coil 241 261 - -
Lja5g2744 354 MobiDBLite consensus disorder prediction 111 149 - -
Lja5g2744 354 SMART tpr_5 186 219 IPR019734 GO:0005515
Lja5g2744 354 SMART tpr_5 152 185 IPR019734 GO:0005515
Lja5g2744 354 SMART tpr_5 296 329 IPR019734 GO:0005515
Lja5g2744 354 SMART tpr_5 262 295 IPR019734 GO:0005515
Lja5g2744 354 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 10 349 - -
Lja5g2744 354 Gene3D Tetratricopeptide repeat domain 263 346 IPR011990 GO:0005515
Lja5g2744 354 Pfam Tetratricopeptide repeat 162 219 - -
Lja5g2744 354 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 10 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2744 Lja-Chr5 54407822 54410616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2744 - - cam:101497721 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0918 1 9026326 9028935 Lja5g2744 5 54407822 54410616 PCT