Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0918 ATGGCTTCCCTTCCCAATCTCCGCCCCTCTCCGCTCTCAGCCTCCCTCAACCCCCGCCGTTCATCATTCCCCACTCCCTTATCTTCCTCCCTCTCCTTCACTCCCCAATTCCCCTCCTCCTCCTCCTCGTTCCGGTCACCACCATCCATCACCGTCAGAGCCTCCTCCTCCTCCTCAAACGACCCCGCCTTTCACAAACCCCCAAACACCGACACCAACAACTTCTCCTCCCTCCCCCCTCTCCTCCAAACCCTCCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCCACCGCCTTCTTCTTCATGCGCTTCCACCACAACCCCGTCATCGCCGCCCCCCTCACCCCTCCCACAACCATCCAATCCGAAACCACCACCACCGCCGCCGACGAAGAAGAAGCTGAGCGCGCCATCGAAGACCGCCTCACCACCAACCCTAACGACACCGAAGCCCTCCGCGCACTCATGGAGCTCAAGATCAGAGCTCGCAAGATCGACGAGGCTATTTCCGTCATCGACCGCTTGATCGAGCTCGAGCCGGAGGAGCACGAGTGGCCACTGCTCAAGGCCAACATGCACATCTACAACGACGACCACGATTCCGCTACGAGAATCTTCGAGGATATCCTCAAGAAGGACCCGTATCGAGTTGAGGCGTTTCACGGCCTCGTCATGGCGACTTCGGAGTCCAACGAGCAGTTGAAGGGGCTGCTCAAGAGGGTGGAGGAAGCCACCGAGTCTTGCAGGAAGCAGAAGAGGGATAACGATGTGAGGGATTTCAGGCTCTTGAGTGCGCAGATCAAAGTGATGGAGGGGGATTTCTCTGCGGCATTGAAGGCCTATCAGGAGCTGGTCAAGGAAGAACCTAGGGATTTCAGGCCTTACCTGTGTCAGGGTATCATATATACCCTGTTGAGGAAGAAAGATGAAGCTGAGAAGCAATTCGACAAGTTCCGTAGGCTTGTTCCCAAGAATCATCCTTATAAGGAGTATTTTGAGGATAACATGTTTGCTACCAAGTTTTTCTCGCAGAATTTGGAGAGGGAAGGAGCACGTGCTAGGAGCTGA 1077 0.5608 MASLPNLRPSPLSASLNPRRSSFPTPLSSSLSFTPQFPSSSSSFRSPPSITVRASSSSSNDPAFHKPPNTDTNNFSSLPPLLQTLLSPVVETTCIVIAATAFFFMRFHHNPVIAAPLTPPTTIQSETTTTAADEEEAERAIEDRLTTNPNDTEALRALMELKIRARKIDEAISVIDRLIELEPEEHEWPLLKANMHIYNDDHDSATRIFEDILKKDPYRVEAFHGLVMATSESNEQLKGLLKRVEEATESCRKQKRDNDVRDFRLLSAQIKVMEGDFSAALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDKFRRLVPKNHPYKEYFEDNMFATKFFSQNLEREGARARS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0918 358 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Lja1g0918 358 MobiDBLite consensus disorder prediction 6 75 - -
Lja1g0918 358 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 350 - -
Lja1g0918 358 MobiDBLite consensus disorder prediction 1 75 - -
Lja1g0918 358 Coils Coil 234 257 - -
Lja1g0918 358 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 350 - -
Lja1g0918 358 Gene3D Tetratricopeptide repeat domain 121 341 IPR011990 GO:0005515
Lja1g0918 358 SUPERFAMILY TPR-like 133 326 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0918 Lja-Chr1 9026326 9028935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0918 - - gmx:102661172 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0918 1 9026326 9028935 Lja5g2744 5 54407822 54410616 PCT