Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2646 ATGGAATCTGCAAGGACCATTTTTTGTGCGTCTCCACCTTTTCCTCCAAGAACTCACCATTGGAACACTCTTCCTTCATCTTCTTACACTTCTGTTTTGATGTTTCGCGAACAAGCTGCCCCTACTGTCTCCTCCCGGTCTACTAGTGTTTCAGCCCAAAAATTTCCCACCTCAGTGCTTTTACAAGAGCAGCGTGATGAGCAGAGGCCTCTTTTGCACGTTTCTAAGGAAGACAAGACATGCCAGGCAGTATTAAATGCAAGGCAGGTGGATATGTCCTTGGTTCATGAAGAGAATAACATTGGCAAAGTTGATCAGGTAGTAGATGATTTTCGGCAGCACTTGCATCTCTGGCCCCACTTACAGAACTTATTAACTTCCTCAGAAACCGGAGAAGTTGATGCTTCTTCAACTCTACAGCATGTTACTGTTGCAGAGAGGCCAGCTAATGATGTGCCGTGTAATGCAATTTCTCTTAGTAGGCAAGCTTTGTCTCCCTCAAAACATGAAGCCTCAGTAGCTGATGACTTGAAATCAATTAGCGCTGATGACGATGCTGATGATTCAATTCCTTTTAGTTTCGCTGACCCATCACGTCGAAGCAATAAAACTGTAAGGTCAACACGGCTTCTAGAGAGACAATCAAAACAAAGAAAAGTATCCAAGTCAAAAGTTAAAGACAATGATACTTACCTTGCAAGAAAGGATGATCCACAGGAAAGGATACGTGTGAAAAGGAAAATAAATGAAGCATTTGATCAAAACGATCCCCAGCGCTTGTTCTTGCGGAGTCCTGGCAAAAAACTTTTGCCTATTGAAGAAGAGTCTCAGTTGATTGTTCAGATACAGGACTTACTGAAATTGGAAGAATTGAAGACCAGTCTTCAATCTCAATTTGGGAGAGAACCAACTATGGCTGAATGGGCTGAGGGTGCAGGACTTAAATGTCGAGCGCTGCAAATGAAGCTTCGTTGTGGCAACAGAAGCAGAGAAAAGCTGATTAAAGCAAATTTGCGCATGGTACTCCATGTTGCTAAAACTTACCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTTTGAAGAGTGTTAAAAAGTTTAAGCCCCAAGTGGGTTGCCGATTTGGTAGTTATGCATATTGGTGGATAAAGCAAGCAATAAGGAAGGCCATATTTCATCATTCGAGGACAATCCGTTTGCCGGAAAAGGTATATACCCAGTTGGGCAAAATATTGGAGGCAAAGAAATTATACATTCAAGAGGGCAATCTTCGCCCAACCAAAGAAGATTTGGCAAGAAGGGTAGGAATTTCAGAAGACAAGATTTCCAGTTTGCTATATGTTGCCAGAATTCCAATGTCTATGCAGCAAACTGTATGGACTGACCAAAATACAACTTTCCAGGAGATTACTGCAGACACTTCAATCGAGTCCCCAGATAGTAGCGTTTCAAAAGAGCTTATGAGGCGGCATGTGCTCAATCTACTAAGCACGCTACGCCCGAAAGAAAGGAGGATAATCCGGCTAAGATTTGGTTTTGAGGATGGAGAACAAAAATCTTTATCAGAAGTTGGAGAGATATTTGGTTTGTCCAAGGAAAGGGTCCGTCAGTTGGAGAACCGCGCGTTCTACAAGCTCAAGAAGTGCCTTGCAAGCCAAGGACTTGATGCTTATGCAGACTTGCTTGTATAG 1710 0.431 MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVADDLKSISADDDADDSIPFSFADPSRRSNKTVRSTRLLERQSKQRKVSKSKVKDNDTYLARKDDPQERIRVKRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYADLLV* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2646 569 Gene3D - 406 483 IPR036388 -
Lja5g2646 569 Pfam Sigma-70, region 4 501 554 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 ProSitePatterns Sigma-70 factors family signature 2. 526 552 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 Gene3D - 484 558 IPR036388 -
Lja5g2646 569 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 329 556 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 Gene3D - 193 402 - -
Lja5g2646 569 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 569 - -
Lja5g2646 569 Pfam Sigma-70 region 2 333 402 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 466 564 IPR013324 -
Lja5g2646 569 Pfam Sigma-70 region 3 413 488 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 MobiDBLite consensus disorder prediction 188 227 - -
Lja5g2646 569 MobiDBLite consensus disorder prediction 202 227 - -
Lja5g2646 569 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 406 479 IPR013324 -
Lja5g2646 569 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 569 - -
Lja5g2646 569 PRINTS Major sigma-70 factor signature 357 370 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 PRINTS Major sigma-70 factor signature 541 552 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 PRINTS Major sigma-70 factor signature 526 541 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 PRINTS Major sigma-70 factor signature 381 389 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 PRINTS Major sigma-70 factor signature 505 517 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 ProSitePatterns Sigma-70 factors family signature 1. 357 370 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 255 403 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lja5g2646 569 CDD Sigma70_r4 495 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2646 Lja-Chr5 52881532 52886966 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2646 - - gmx:100306289 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2646 5 52881532 52886966 Lja5g2646 5 52881532 52886966 ECH
Lja1g0837 1 8190467 8195018 Lja5g2646 5 52881532 52886966 PCT