Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0837 ATGAACGCCGCTAAGAGCATGTTTTCTTCTTCATCTCCACCGTTTTCTTCACCTACAGTTATGATGCTTCATGAACAAGCTGTTCCTGCTGTTTCTTCTTGGCCTTCTGGTATTGCAGCACAGCATTTTCCTACTTCAGTTCTTTTGCAAGAGCAGCGTGATGAGTATAAGCCTCTACTTCACATCAATAAGGAAGATAAGACACCCCAGGCGACTTCGAGTATGAGGCCGATGGATGTGGCCTTAGTTCAAGAGAAGAACAACACTGGCAATGCTGATGAGTTAGTGCACAACTTTATGCAGCAGTTGCATCTCCGGTGTCATTTGCAGAACTTATTGAGTTCTTCGCTAACCAGGGAAATTGCTGCTTCTTCGACTCTGCAATCTATTACTGATGATTCAGAGCGGTCTCCGGATGGCCTTCAATGGAATGCAGTTTCTCTTGCTAAGCAAGCTTTGTCAGCCTCAAAACAAGCAGCTGCAGTAGCTGAGGAGTCGAAACTTATTGAAGCTGATGATGATGATAATGATGATTCACTTCCTTTCGGTCTGGCCTCCACATGTTTCCCCGACTCTTCAGTTAGAAGGAATAAAATTGTGAGGTCAACACGGCTTAAAGAAAGACGATCTAAACAGAGAAAAGTATCAAAATCGAGTGTTCTTGACGATGAAAGTTACCTTACAAGAAAGTCAGATGTTCAAGGAAGGTTACGTGTAGAGAAGAAATTAAAAGAAGGGCTTGATCAAAATGATCCCCTGCGCATGTTCTTATGGGGTCCTGAAACTAAGAAACTTTTGACCTTTGAAGAAGAGTCTCAATTGATTTCTCAGATACAGAATTTGTTCAGATTGGAAGAAGTGAAGATCAGGCTTCAATCTCAGTTTGGGCGTGAACCAACTATGGCTGAATGGGCAGATGGTGTGGGTCTTAGCTGTTATGCCCTGCAGACACAGCTTCGTAGTGGTACAAGAAGCAAGGAAAAGCTGATTCATGCCAATTTACGCATGGTAGTTCATGTTGCTAAAAATTATCTGGGGCGTGGTCTCAGCTTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTCATGAAGAGCGTTGAAAAGTTTAAACCCCAAGCTGGTTGCCGGTTCGCTTCTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTACATTCTAGGACGATCCGTCTTCCGGAGAATGTTTACACCCTTTTGGGCAAGCTCATCGAAGCAAAGAAATTCTACAATAGAGAAGGAAATGTTCACCCCACAAAAGAAGAATTAGCAAGAAAAATAGGAGTTACAGTAGACAAGTTGGAAATATTGCTATCTGCTGCCAGAATTCCACTTTCGATGCAGCAAACGGTGTGGACAGACCAGGATACAACTTACCAGGAGATTACTGCAGACACCGCAATTGAGACCCCAGATGTGTATGTTGCAAAACAGCTAATGAGGCGTCACGCGCGCAACCTTCTACATACCTTAAACCCAAGAGAAAGGAGGATAATCAGGCTAAGATTTGGCATTGAAGATGGCTACGAGAAATCTTTGTCAGAAATTGGCACTGTATTTGGTTTGTCTAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGGATAAGCTCAAGCAGTGCCTTGCTAGTCATGGACTTGATGCATATGCAAACTTGCTTGTATAG 1698 0.4364 MNAAKSMFSSSSPPFSSPTVMMLHEQAVPAVSSWPSGIAAQHFPTSVLLQEQRDEYKPLLHINKEDKTPQATSSMRPMDVALVQEKNNTGNADELVHNFMQQLHLRCHLQNLLSSSLTREIAASSTLQSITDDSERSPDGLQWNAVSLAKQALSASKQAAAVAEESKLIEADDDDNDDSLPFGLASTCFPDSSVRRNKIVRSTRLKERRSKQRKVSKSSVLDDESYLTRKSDVQGRLRVEKKLKEGLDQNDPLRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIETPDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAYANLLV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0837 565 PIRSF Sigma_factor_SigC 1 565 IPR016262 -
Lja1g0837 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 462 560 IPR013324 -
Lja1g0837 565 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 Gene3D - 246 398 - -
Lja1g0837 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 402 475 IPR013324 -
Lja1g0837 565 Pfam Sigma-70 region 3 410 482 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 Pfam Sigma-70, region 4 497 550 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 ProSitePatterns Sigma-70 factors family signature 1. 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 11 565 - -
Lja1g0837 565 Gene3D - 484 564 IPR036388 -
Lja1g0837 565 Pfam Sigma-70 region 2 329 393 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 552 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 Gene3D - 402 479 IPR036388 -
Lja1g0837 565 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 11 565 - -
Lja1g0837 565 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 249 399 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lja1g0837 565 CDD Sigma70_r4 491 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0837 Lja-Chr1 8190467 8195018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0837 - - gmx:100793539 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0837 1 8190467 8195018 Lja1g0837 1 8190467 8195018 ECH
Lja1g0837 1 8190467 8195018 Lja5g2646 5 52881532 52886966 PCT