Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2582 ATGTCTCCTGTAATGGCAGTAAGTGCTCATAATCACAAGGGTGAATGCCATAAAGGAGTGAAGCAGCTGGTTGATAGTGGCCTTCAAAGGGTACCTAAAAAGTACATACTTTCTCCTTCAGAACGTCCTGCTACCAATATGGAAGAAGATCCAATAAATGTTGCCAAGCAAAACCTTCAGCTACCCATCATTGATTTTTCTGATTTGCTTGGTCCAAATAGGCCCCAAGTCCTTCAAAACCTTGCAGCTGCTTGTGAAGGCTACGGGTTTTTTCAGCTGGTAAACCATGGGATCTCAGATGATGTTATAAGAAGCATGATTGGTGTGGTCGGAAGGTTCTTTAATCTTTCATTTGAGGAGAGAACTAGATACATGACAGAAGACATGAGAGCAGCGGTTCGATATGGGACTAGTTTCAGCCAAACCAAGGACAGCGTGTTCTGTTGGAGGGACTTCTTGAAACTCCTCTGTCATCCCTTGCCTGAATTCCTTCCACATTGGCCTCCTTCCCCTGTGGACTTTAGGAAAGTGGCGGCTACCTACGCACAAGAAACCAAACACTTATTCCTGATGTTAATGGAAGCCATCGTAGAGAGTTTAGGAATCATGGAAGCCAACGAAGGAGAAGAGACATTAGAGAAGGACAATATTCTGAAAGAAATGGAAGATGGAAGCCAGGTTTTGGTGACCAATTTCTATCCACCATGCCCTGAGCCAGACCTAACCCTAGGCATGCCCCCTCACTCTGATTATGGATTCCTCACACTTCTTCTCCAAGACGAGGTTGAGGGTTTGCAGATCCAATTCCAAGAGAAATGGTTCACTGTCCAACCTATCAACAATGCCTTCGTTGTAAATGTTGGTGATCATCTTGAGATATATAGCAACGGGAAATACAAGAGCGTGTTACACAGGGTTGTGGTGAATTCAGCAAATAGCAGGACTTCAGTGGCTTCGCTGCATAGTCTTCCTTTCAACAGCACCGTGAGACCGTCACCGAAACTTGTAGATGAAACGAATCCCAAACGTTACGCGGACACGGACTTTGAAACTTTTCTTGCTCACATTTCAACCACTGAGACCAAGAGAAAGGATTTCCTAAACTCTAGGAAATTGACTTCGACATGA 1128 0.445 MSPVMAVSAHNHKGECHKGVKQLVDSGLQRVPKKYILSPSERPATNMEEDPINVAKQNLQLPIIDFSDLLGPNRPQVLQNLAAACEGYGFFQLVNHGISDDVIRSMIGVVGRFFNLSFEERTRYMTEDMRAAVRYGTSFSQTKDSVFCWRDFLKLLCHPLPEFLPHWPPSPVDFRKVAATYAQETKHLFLMLMEAIVESLGIMEANEGEETLEKDNILKEMEDGSQVLVTNFYPPCPEPDLTLGMPPHSDYGFLTLLLQDEVEGLQIQFQEKWFTVQPINNAFVVNVGDHLEIYSNGKYKSVLHRVVVNSANSRTSVASLHSLPFNSTVRPSPKLVDETNPKRYADTDFETFLAHISTTETKRKDFLNSRKLTST* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2582 375 Pfam 2OG-Fe(II) oxygenase superfamily 226 321 IPR044861 -
Lja5g2582 375 Gene3D - 10 355 IPR027443 -
Lja5g2582 375 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 12 372 - -
Lja5g2582 375 SUPERFAMILY Clavaminate synthase-like 18 357 - -
Lja5g2582 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 323 IPR005123 -
Lja5g2582 375 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 372 - -
Lja5g2582 375 PRINTS Isopenicillin N synthase signature 248 269 - -
Lja5g2582 375 PRINTS Isopenicillin N synthase signature 81 98 - -
Lja5g2582 375 PRINTS Isopenicillin N synthase signature 283 309 - -
Lja5g2582 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 61 159 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2582 Lja-Chr5 51009767 51014607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2582 18 352 Glycosyltransferase AT5G59530 34.195 3.15e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2582 - - gmx:100805175 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2582 5 51009767 51014607 Lja5g2582 5 51009767 51014607 ECH
Lja1g0783 1 7569787 7573499 Lja5g2582 5 51009767 51014607 PCT