Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0783 ATGTCTCCTGCAATGGTAATGAATGACCAGAGGAGAGAGGATGATATACCAGAAATTCAATATCATAAAGGAGTGAAGCACCTGTTTGAGAACGGTCACCTTCAAACTGTACCAAGAAAGTATATACTTCCAGCTTCAGACAGACCCACCACAAGTATTGATGTCCCAAATAATGTTGCAAAGCAGAATCTTCAGCTGCCCATTATTGATTTTGCTGATTTGCTTGGTCCCAATAGGCCCCAAGCCCTTCAGTCCCTAGCCAATGCTTGTGAGCAGTATGGCTTTTTCCAGCTGGTAAATCATTGCATCTCAGATGATGATATAAAGAGCGTGATAGATGTGATAGGTAAGTTCTTTGATCTCCCTTTTGAGGACAGAGCCAAGTACATGACAACTGATATGCGAGCACCTGTTCGATATGGGACTAGCTTTAGCCAAACCAAAGACACTGTGTTCTGCTGGAGGGATTTCTTGAAACTTATGTGCGATGCAGATTATGTCCCTCATTGGCCTTCTTCCCTCGGCGACTTCCGGAAAGTGGTGGCCACCTATGCAGAAGAAACCAAACACTTGTTCCTAGTAATAATGGAAGCCATCCTAGAGAGCTTAGGAATTATGGAAGCCAGCAAAGAACAGAAGACAGAAGAAAAGGACAATATTATGAGAGACTTCAGCAATGGGAGCCAGATGATGGTAGCTAATTTCTACCCAACATGCCCTGAACCAGACCTAACCCTGGGAATGCACCCTCACTCTGATTATGGGTTCCTCACACTTCTCCTCCAAGATGAGGTGGAGGGTTTGCAGATCCAATACCAAGAAAAATGGGTCACTGTTCAACCTATTCCCAACGCCTTTGTGGTCAACATAGGCGATCACTTAGAGATATATAGCAATGGAAAATACAAGAGCGTATTGCACAGGGTTGTGGTGAATGAAGTTAAGAGCAGGGTATCAGTGGCTTCACTGCATAGCCTTCCCTTCACCTGCACGGTGAGAGTGTCGCCAAAACTCATTGATGAAGAGAATCCCAAGCGTTACATGGACACTGATTTTGAAACCTTTCTTGCCTATGTATCTTCTAGAGAACCCAAGAAAAAGGATTTCCTCAACTCCAGGAAATTATTCACATGTACATAA 1140 0.4386 MSPAMVMNDQRREDDIPEIQYHKGVKHLFENGHLQTVPRKYILPASDRPTTSIDVPNNVAKQNLQLPIIDFADLLGPNRPQALQSLANACEQYGFFQLVNHCISDDDIKSVIDVIGKFFDLPFEDRAKYMTTDMRAPVRYGTSFSQTKDTVFCWRDFLKLMCDADYVPHWPSSLGDFRKVVATYAEETKHLFLVIMEAILESLGIMEASKEQKTEEKDNIMRDFSNGSQMMVANFYPTCPEPDLTLGMHPHSDYGFLTLLLQDEVEGLQIQYQEKWVTVQPIPNAFVVNIGDHLEIYSNGKYKSVLHRVVVNEVKSRVSVASLHSLPFTCTVRVSPKLIDEENPKRYMDTDFETFLAYVSSREPKKKDFLNSRKLFTCT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0783 379 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 226 326 IPR005123 -
Lja1g0783 379 Gene3D - 16 358 IPR027443 -
Lja1g0783 379 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 15 375 - -
Lja1g0783 379 SUPERFAMILY Clavaminate synthase-like 24 361 - -
Lja1g0783 379 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 15 375 - -
Lja1g0783 379 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 164 IPR026992 -
Lja1g0783 379 Pfam 2OG-Fe(II) oxygenase superfamily 229 324 IPR044861 -
Lja1g0783 379 PRINTS Isopenicillin N synthase signature 86 103 - -
Lja1g0783 379 PRINTS Isopenicillin N synthase signature 251 272 - -
Lja1g0783 379 PRINTS Isopenicillin N synthase signature 286 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0783 Lja-Chr1 7569787 7573499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0783 23 355 Glycosyltransferase AT5G59530 31.412 3.75e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0783 - - gmx:100778488 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0783 1 7569787 7573499 Lja1g0783 1 7569787 7573499 ECH
Lja1g0783 1 7569787 7573499 Lja5g2582 5 51009767 51014607 PCT