Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2564 ATGCGGTGTTTCATTTCATTGCTGTTGGGTATAGCCACCGTGCTGGTGACGGCGGTGTGCGGCGGTTTCCTCCGTGTGGAGCGAGCCATTCCGCTGAGCCACCGTGTGGAGATGGAGGAGCTCAGGGCTCGTGACAGAGCCCGCCACGCTCGAGTCTTGCGAGGTGTGGTTGGTGGCGTCGTCGACTTCTCAGTCCAAGGCACCTCTGATCCTTACTCCGTTGGGTACGGGCTGTATTTTACCAAGGTGAAGATGGGGTCTCCTCCAAGGGAGTTTAATGTTCAGATTGATACTGGAAGTGACATTTTGTGGGTTAATTGCAATACTTGCAGTAATTGCCCTCAAACTAGTGGGCTGGGGATTGAGCTCAATTTCTTTGACACGGTCGGCTCAACCACAGCTGGGTTGGTTCCCTGCTCGGACCCGATATGTACTTCTGGTGTTCAAGGTGCGGCAGCTGAATGCTCCCCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTATTATGTTTCTGATGCAATGTATTTTGACATGATCCTGGGACAGGCTCCTCCGGTTAACTCTTCGGCTAACATTGTTTTTGGGTGTAGCACCTATCAGTCTGGAGATTTGACTAAGGCAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTGTATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGAAATGGAGGAGGCATCCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTAAATGGGCAACTCCTTTCAATTAATCAAGCTGTGTTTGCAACATCTAACAATAGAGGAACTATAGTTGATTGCGGGACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAATGCTATAACTACTGCTGTGTCACAATCTACCAGCCCCATCATTTCAAAAGGAAATCAGTGTTATCTGGTCTCAACCAGAGTAGGTGATATTTTTCCTACAGTCAGTTTAAACTTTGCTGGTGGAGTATCGATGCTTTTGAAACCAGAACAGTACCTTATGCCTTATGGTTTCGTTGATGGTGCTGCAATGTGGTGCATAGGTTTCCAGAAAGTGCAAGAGGGGGTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTCTATGACTTAGCTAATCAACGCATCGGATGGACTAACTATGATTGTTCCTTGTCGGTGAACGTCTCCGTGACTTCCAGCAAGGATGAGTACATCAGTGCTGGACAGCTGAGGGTCAGCAGCTCAGAGTCAGTGACAGGGATTCTCTCCAAGTTACTACCTGTAAGCATTGTGGCAGCTCTCTCTATGCACATAGTAATCTTCATGAAGTCCCCATTTTTGCAATTTTAA 1494 0.4612 MRCFISLLLGIATVLVTAVCGGFLRVERAIPLSHRVEMEELRARDRARHARVLRGVVGGVVDFSVQGTSDPYSVGYGLYFTKVKMGSPPREFNVQIDTGSDILWVNCNTCSNCPQTSGLGIELNFFDTVGSTTAGLVPCSDPICTSGVQGAAAECSPQVNQCSYTFQYGDGSGTSGYYVSDAMYFDMILGQAPPVNSSANIVFGCSTYQSGDLTKADKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLSINQAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVNAITTAVSQSTSPIISKGNQCYLVSTRVGDIFPTVSLNFAGGVSMLLKPEQYLMPYGFVDGAAMWCIGFQKVQEGVTILGDLVLKDKIVVYDLANQRIGWTNYDCSLSVNVSVTSSKDEYISAGQLRVSSSESVTGILSKLLPVSIVAALSMHIVIFMKSPFLQF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2564 497 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Lja5g2564 497 PANTHER ASPARTYL PROTEASES 11 456 IPR001461 GO:0004190|GO:0006508
Lja5g2564 497 CDD pepsin_A_like_plant 79 437 IPR034161 -
Lja5g2564 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 11 456 - -
Lja5g2564 497 Gene3D Acid Proteases 62 265 IPR021109 -
Lja5g2564 497 Gene3D Acid Proteases 266 444 IPR021109 -
Lja5g2564 497 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Lja5g2564 497 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Lja5g2564 497 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Lja5g2564 497 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Lja5g2564 497 SUPERFAMILY Acid proteases 74 440 IPR021109 -
Lja5g2564 497 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2564 Lja-Chr5 50631972 50636703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2564 77 438 Miscellaneous Gene Families AT1G44130 29.243 2.60e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2564 - - gmx:100820394 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2564 5 50631972 50636703 Lja5g2564 5 50631972 50636703 ECH
Lja1g0776 1 7528247 7533640 Lja5g2564 5 50631972 50636703 PCT