Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0776 ATGCGGGATTGTGTCTCCCTGTTGTTATTGACCCTAACCACCGTCACCGTCACCGTCGTGGTGCTCCCGGCGAAGGTGGTTTACGGCGATTTTCCGGGTAGCTTTCTTCCTCTGGAACGAGCCATCCCTCTGAACCACCGAGTTGAACTGGAGGCACTCAGAGCTCGCGATAGAGCCCGCCATGGCAGAATCTTGCAAGGTCTGGTTGGTGGCGTTGTCGACTTCTCACTCCAAGGAAACTCCGATCCTAGCTTCGGTGGCGACGGGTTGTATTTCACTAGAGTGAAGATGGGGTCTCCTGCAAAAGAATTTTACGTTCAGATTGACACTGGAAGCGACATCTTGTGGCTAAATTGCAAAACTTGCAGCAATTGCCCACAATCTAGTGGATTAGGGATTGAGCTCAATTCCTTTGACATAGCAATCTCATCTACTGCTGCAACGGTTTCCTGCTCGGACCCTGCATGTTCTTATGCAGTTCAGACTTCAACAAGTGGATGTGATTCTCAGGTTAATCAGTGCAGTTACGCGTTACGGTATGGGGATGGAAGTGGAACATCTGGTTATTATGTTTCCGATACGATGTATTTTGACGTGATCGTGGGACAGTCCATGGCTTCTAACTCTTCATCCAGCGTCGTTTTTGGGTGTAGCACCAATCAGTCTGGGGATTTGTCTCAGTCAAATAAAGCAGTTGATGGAATTTTTGGCTTTGGCCCGAGTGCTTTATCAGTTATATCACAACTGTCATCACAAGGCGTTACTCCCAAAGTGTTCTCTCATTGCTTAAAAGGGGAGGGAAATGGAGGAGGCATACTAGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAATATAAATCTTCAGAGCATTTCTGTCAATGGACAACTTCTCTCAATTGATCCAGATGTATTTACAAAACCCAACAATGGAGGAACTATAGTTGATTCTGGTACAACATTGACATACCTTGTTCAAGAAGCATACGATCCTTTTGTCAGTGCAATAACTACCGCTGTGTCACAGTTTTCCAGACCGATTATTTCAAACGGAAACCAGTGCTATCTGGTCTCTACCAGCTCGGGTGATATATTTCCAACAGTCACTTTAAATTTTATGGGGGGAGCACCCATGGTTTTAAAACCAGGGCAGTATCTTATACATCATGGTTTCCTTGATGGTGCTGAAATGTGGTGCATCGGTTTCCAGAAAGTGCAGGAGGGGTTCACAATTTTAGGAGATCTTGTCCTGAAAGATAAGATTGTTGTATATGACCTAGCAAATCAACGAATTGGGTGGGCCGACTATGATTGTTCCTTGGCTGTAAACGTCTCGGTTGCTGCAAGCAAGAGCAAGGATACGTACATCAGTGCAGGACAGATGAGTGTCAGCAGCTCCCAAATAGGCATTCTCTCCAAGTTGTTACCTGTAAGCATGGCGGCTTTTCTTGTGCACATAGTTTTCATGGAGTCCCAATTTTTGCAGTAA 1521 0.453 MRDCVSLLLLTLTTVTVTVVVLPAKVVYGDFPGSFLPLERAIPLNHRVELEALRARDRARHGRILQGLVGGVVDFSLQGNSDPSFGGDGLYFTRVKMGSPAKEFYVQIDTGSDILWLNCKTCSNCPQSSGLGIELNSFDIAISSTAATVSCSDPACSYAVQTSTSGCDSQVNQCSYALRYGDGSGTSGYYVSDTMYFDVIVGQSMASNSSSSVVFGCSTNQSGDLSQSNKAVDGIFGFGPSALSVISQLSSQGVTPKVFSHCLKGEGNGGGILVLGEILEPNIVYSPLVPSQPHYNINLQSISVNGQLLSIDPDVFTKPNNGGTIVDSGTTLTYLVQEAYDPFVSAITTAVSQFSRPIISNGNQCYLVSTSSGDIFPTVTLNFMGGAPMVLKPGQYLIHHGFLDGAEMWCIGFQKVQEGFTILGDLVLKDKIVVYDLANQRIGWADYDCSLAVNVSVAASKSKDTYISAGQMSVSSSQIGILSKLLPVSMAAFLVHIVFMESQFLQ* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0776 506 SUPERFAMILY Acid proteases 87 451 IPR021109 -
Lja1g0776 506 PANTHER ASPARTYL PROTEASES 6 468 IPR001461 GO:0004190|GO:0006508
Lja1g0776 506 Gene3D Acid Proteases 75 277 IPR021109 -
Lja1g0776 506 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 468 - -
Lja1g0776 506 CDD pepsin_A_like_plant 91 449 IPR034161 -
Lja1g0776 506 ProSiteProfiles Peptidase family A1 domain profile. 91 445 IPR033121 -
Lja1g0776 506 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Lja1g0776 506 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Lja1g0776 506 PRINTS Pepsin (A1) aspartic protease family signature 421 436 IPR001461 GO:0004190|GO:0006508
Lja1g0776 506 Gene3D Acid Proteases 278 455 IPR021109 -
Lja1g0776 506 Pfam Xylanase inhibitor N-terminal 91 276 IPR032861 -
Lja1g0776 506 Pfam Xylanase inhibitor C-terminal 294 445 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0776 Lja-Chr1 7528247 7533640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0776 73 450 Miscellaneous Gene Families AT1G44130 28.250 1.76e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0776 - - gmx:100804147 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0776 1 7528247 7533640 Lja1g0776 1 7528247 7533640 ECH
Lja1g0776 1 7528247 7533640 Lja5g2564 5 50631972 50636703 PCT