Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2562 ATGGAAAACACAGCACTGAAGCCAGAAAATCTAAAGCCAGTTATCCTCAGAGCTGGTGTTCCCCTTGCTGTATCTGTGGCTGGTTTGATCTATGCATGGATCATGGCAAGGAAAAGCTTATCCAAAATCTCTTCTTCATCAGAAAATGAGCCTGATTCCCCTGTAACCAATTGTCATGAAGGAAGTAAACAACATGAAGAAAGCTTTCCTAGCCATTCTTCTATGGAAGATGAAGAACCTGTTGTGACTCTGACACGGACACCGGACACCACACGACACGGATACAGTGACACGGTTAACATCCAAAAAGTGTGTCGTGTCCTTTCTGGGAGCATGGAAATCCTTGACAACCATCCATGTTTGGAACAAGAGATCACTGGCCTAAGAAGCCGAATCGAAAGTCTGCAAATGAGAGAATTGGCCTTAAATTTGCAGTTTGAAGAGTATTGTGAAATGAAAGAGCAAGAATCTCTGCTAATGGAAATCAACAACATGCTGGCATTGGAGACCGCACGCGTCGAATTCTTGGATAGAGAGGCCTCATCCATAGAGGCAGAAACTATGAGATTGGAGAATTTTGCAGTCCAATACCTGAGGATCATTGAACAGCTTGAGTTTTGGAAATCAGAATATGGGATTCTTCAGAGGAAGGTTCAGAAGCTACATAGGAAAACAAAGGCGCAATCCCACTTGATAAAGGAGCAGACTTTGAAGATCAAAGAGGAACAAGAAGAAATCTTGAAGAGCCATGATGCCTTGCAAACAAGGATTAGTGTGATTAACAAGTTAGAGGATGAAATCAGAGAGCTAAAAATGGTTTTGGATCAATTGCAGGAGGAGAAGAATGAACTTCAGAAGAAGCTTGACACAGCAGAAGAATTTCCTTCTAAGGATCAGGTTCATAGAAAACCACTGAAATATTATTTGCAGATTGAATCAGAAGATTACAGCCTGCTTCTGAATGAATTAGAGCAGGTCAAGAAGGAACGCGAAACTGAAGCTGAAGAATTGATTAACTTGAGGAGGATCAATGCTTTCTTAAGGCAAGAGTTATTGGGAAACCATGAGAAACAACAGGATCAGGATAGAGACCATAATATGGAGCTGGAATTTGAAGGGAATGGAGGAGTTATGCAGTATGATTCAGAGCATGAATTTCAGTGTTCCTTTTGGGAGAATCACAAGGTTTCTTGCATTGGTTCTGCTCATAATGATCAAGCAAGTTCCAAAAGGAGAAAGTTGCTTAAAAGGTTGAAGAGATGGGTGGAAGGAAGTGAAAAGGTAAGAGTGAAACCAGAGGAGAAAGGTGAAATTAAGTGTTTTGGTGAGCATTCTGTTTTCTATGGATCACCGAAACCTGAAGTTTCTGCTACTGCAAGGTTTTGTTCTAGTGCTTAA 1398 0.4113 MENTALKPENLKPVILRAGVPLAVSVAGLIYAWIMARKSLSKISSSSENEPDSPVTNCHEGSKQHEESFPSHSSMEDEEPVVTLTRTPDTTRHGYSDTVNIQKVCRVLSGSMEILDNHPCLEQEITGLRSRIESLQMRELALNLQFEEYCEMKEQESLLMEINNMLALETARVEFLDREASSIEAETMRLENFAVQYLRIIEQLEFWKSEYGILQRKVQKLHRKTKAQSHLIKEQTLKIKEEQEEILKSHDALQTRISVINKLEDEIRELKMVLDQLQEEKNELQKKLDTAEEFPSKDQVHRKPLKYYLQIESEDYSLLLNELEQVKKERETEAEELINLRRINAFLRQELLGNHEKQQDQDRDHNMELEFEGNGGVMQYDSEHEFQCSFWENHKVSCIGSAHNDQASSKRRKLLKRLKRWVEGSEKVRVKPEEKGEIKCFGEHSVFYGSPKPEVSATARFCSSA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2562 465 Coils Coil 309 343 - -
Lja5g2562 465 MobiDBLite consensus disorder prediction 78 95 - -
Lja5g2562 465 Coils Coil 260 294 - -
Lja5g2562 465 PANTHER CHUP1-LIKE PROTEIN 1 465 - -
Lja5g2562 465 MobiDBLite consensus disorder prediction 59 74 - -
Lja5g2562 465 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 465 IPR040265 -
Lja5g2562 465 MobiDBLite consensus disorder prediction 44 95 - -
Lja5g2562 465 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2562 Lja-Chr5 50536513 50538259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2562 - - lja:Lj0g3v0227749.1 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2562 5 50536513 50538259 Lja5g2562 5 50536513 50538259 ECH
Lja1g0772 1 7497645 7500015 Lja5g2562 5 50536513 50538259 PCT