Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0772 ATGGAGAACACAGCATCAAAACATGAACTCATAAAGCCAGTAATCCTCAAAGCTGGTATTCCTTTGGCCTTGTCTTTGGCTGGTGTCATCTATGCCTGGATCAGCACAAAGAAAAGGTTATCCTCTAATTTATCAGCAAATCATGCAAATTCCCCTGAAACCAATTCTCACCAGGAGCATAAGCATGAAGAAAGTTGCCATAGTCATAGCCTTGCTTCTATTGAAGATGAAGGATGCAGTACTACCTCAATGGATGCTAGTGTTTTTTGTTTAGAACAAGAGATTTCTGGCCTAAGAAGCCAAATTGAAGGTATGAAAATAAGAGAATTGGCCTTGCGTTTTCAGTTTGATCAGTATTGTGATTTGAAAGAGCAACAATCTCTGCTTGGTGAGATGAAGAACATGATGTCTCTGGAGACCGCCCGCGTGGACTTATTGGATAGGGAGATTTCATCCATGGAGACAGAGAATAAGAGATTGGAGAATTTCGCAGTTCAATATCTCAGAGTTGTTGAACAGATTGAGTATTGGAAATCTGAGAATAGAATGCTGAGGAAAAAGCTTCAGAAGCTAATGAGGAAATCAAAGGCGCTAACACGCCTCACAAAGGAGCAGGCTTTGAAGATCAAAGAGGAAGAAGCAGAAATTTCAAGAAACCGTGATGCCTTGGGAACAAAAATGAATGTTATTGACAAATTAGAGGATGAAATGAGAGAGCTGCAAAGGGTTTTAGATTTATTGCAGGATGAGAAGAATGAACTTCAGAAGAAGCTTGACATAGCAGAAAAATCATATCATGAGTCTAAGGCTTTCCATTTGCAGACTGAAGCAGGGGATGTAAGTAGGGAAGAATACAAACAGCTTCTGGATGAATTGGAGAGGACCAAGAAGGAAAGAACAGATGAAGCTAATGAACTCATCCACTTGCGGTGGACCAATGCTTGCCTAAGGCATGACCTTATGAGGCACCAAGAACAACAACAACAAAATCAGGATAGAAACCATATAGAACTGGAATTTGGAGGAAGCCATGAAGTTATCCATTATGACTCGGAGCATGAATTACGCCACCATTCCCCTTTGGAGCATCATAGTTTTCCTTCCTCTGAGGAGCATCATAGATACAGTGCTTGTTCGAAAAGGAAAAAGTTGCTTGGAAGGCTAAAGAGATGGGTGGAAGGAAGTGAAAAGCCAAGAGTGAGGCATTCTGTTTCAAGAGGGGTAGAGAAACATCATGTTCCTGCAAGGATGTCATGCTCTAGTGATATAGTTTGA 1275 0.4102 MENTASKHELIKPVILKAGIPLALSLAGVIYAWISTKKRLSSNLSANHANSPETNSHQEHKHEESCHSHSLASIEDEGCSTTSMDASVFCLEQEISGLRSQIEGMKIRELALRFQFDQYCDLKEQQSLLGEMKNMMSLETARVDLLDREISSMETENKRLENFAVQYLRVVEQIEYWKSENRMLRKKLQKLMRKSKALTRLTKEQALKIKEEEAEISRNRDALGTKMNVIDKLEDEMRELQRVLDLLQDEKNELQKKLDIAEKSYHESKAFHLQTEAGDVSREEYKQLLDELERTKKERTDEANELIHLRWTNACLRHDLMRHQEQQQQNQDRNHIELEFGGSHEVIHYDSEHELRHHSPLEHHSFPSSEEHHRYSACSKRKKLLGRLKRWVEGSEKPRVRHSVSRGVEKHHVPARMSCSSDIV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0772 424 Coils Coil 278 309 - -
Lja1g0772 424 MobiDBLite consensus disorder prediction 45 69 - -
Lja1g0772 424 MobiDBLite consensus disorder prediction 54 69 - -
Lja1g0772 424 MobiDBLite consensus disorder prediction 402 424 - -
Lja1g0772 424 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 421 IPR040265 -
Lja1g0772 424 Coils Coil 174 201 - -
Lja1g0772 424 Coils Coil 223 264 - -
Lja1g0772 424 Coils Coil 143 163 - -
Lja1g0772 424 MobiDBLite consensus disorder prediction 402 416 - -
Lja1g0772 424 PANTHER CHUP1-LIKE PROTEIN 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0772 Lja-Chr1 7497645 7500015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0772 - - lja:Lj1g3v4691730.1 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0772 1 7497645 7500015 Lja1g0772 1 7497645 7500015 ECH
Lja1g0772 1 7497645 7500015 Lja5g2562 5 50536513 50538259 PCT