Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2556 ATGGCGTCAAGGCAACAATTCGAGGAGAAACGAGCTGAAGAAGCTGCCAAGGTTGCAGCCAAAGATCTTGAAGAAGTGAACAGAGCAAGAGAGAATGATTCTGGTGACCAACAGAAGCGTGGTGTGATTGGATCAGTGCTGCAAGCTGTTCAAAACACCTATGAGAATGCAAAGGGAGCTGTGGTTGGCAAGAAGGACAACCACCCTGCAGATATTGATGCTAATGCTAACAGGGGAGAAGTGGTTGAGGTTATTGGTGGCACTGAAGAGGATGTAAAAGGCGAAGTGAGAGACATATCAGCAACCAAATCCTATGATACTTCCTCTGCCACTACTAACAAAGCAGGTTCCAAGGTTGGGGGGGAGTCCACGGATTTCGCCGCGCAGAAGGCGAAGGAAACGAAGGATGCGACGGTGGAGAAAACCGGTGAGTATGCTGGGTATGCAGGGGAGAAAGCTAAAGAAGCGAAAGACTACACGGCGGAGAAGGCAAAAGAAGGAAAGGACTCTGCTGCTGATGCTGCCAAAAGGGCTGTGGGTTACTTGGGTGACAAGACAGAGGAAACCAAGCAGAAAACTGCAGAAACTGCTGAGGCTGCAAAGAACAAGACTGTGGAGAACACACAAGCTGCAAAGGACTCTGCTACTGATGCTTGTGAAAGGGCTATTGGTTACATGGGTGACAAGAAAGAGGAAACAAAGCAGAAAACCTCAGAAGCTGCTGAGGCTGCAAAGAACAAGACTGCAGAGACAACAGAGGCTGCAAAGCACAGAACTTCAGAGGCAATGGACACAACCAAGGAAAATTTGAGTGGAGCTAGTGAAGAAGCAAGGAGGAAGATGGAAGAGCTTAAGCTGCAAGATAAATCTGGGGATCGTAGTGGTAAGGTGGCGATCAAAGTGGAAGAGACTCGACCAGGAAGGGTGGAGAAACGCTGA 939 0.4878 MASRQQFEEKRAEEAAKVAAKDLEEVNRARENDSGDQQKRGVIGSVLQAVQNTYENAKGAVVGKKDNHPADIDANANRGEVVEVIGGTEEDVKGEVRDISATKSYDTSSATTNKAGSKVGGESTDFAAQKAKETKDATVEKTGEYAGYAGEKAKEAKDYTAEKAKEGKDSAADAAKRAVGYLGDKTEETKQKTAETAEAAKNKTVENTQAAKDSATDACERAIGYMGDKKEETKQKTSEAAEAAKNKTAETTEAAKHRTSEAMDTTKENLSGASEEARRKMEELKLQDKSGDRSGKVAIKVEETRPGRVEKR* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2556 312 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 190 258 - -
Lja5g2556 312 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 1 158 - -
Lja5g2556 312 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 157 191 - -
Lja5g2556 312 Coils Coil 9 29 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 180 199 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 271 312 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 103 119 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 103 122 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 153 173 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 249 264 - -
Lja5g2556 312 Pfam Late embryogenesis abundant protein 124 166 IPR004238 -
Lja5g2556 312 Pfam Late embryogenesis abundant protein 149 178 IPR004238 -
Lja5g2556 312 MobiDBLite consensus disorder prediction 23 37 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 200 214 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 23 42 - -
Lja5g2556 312 PANTHER DAUER UP-REGULATED-RELATED 1 158 - -
Lja5g2556 312 PANTHER DAUER UP-REGULATED-RELATED 157 191 - -
Lja5g2556 312 Gene3D - 121 182 - -
Lja5g2556 312 PANTHER DAUER UP-REGULATED-RELATED 190 258 - -
Lja5g2556 312 Coils Coil 263 287 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 223 243 - -
Lja5g2556 312 MobiDBLite consensus disorder prediction 153 312 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2556 - - lja:Lj0g3v0266719.2 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2556 5 50220748 50222473 Lja5g2556 5 50220748 50222473 ECH
Lja1g0764 1 7424349 7426079 Lja5g2556 5 50220748 50222473 PCT