Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2541 ATGGATACGTTTCAAGAAGCAGATGTTACTTCCCAAATTGGGTTGGTTTGGAGCCAAATCAGAGAGCCACTGATTGTGCCACTGCTGAGGGTGTCAGTGTTTCTGTGCTTGGCCATGTCACTGATGATGTTTGTTGAGAGGGTTTACATGAGCATTGTGATTTGTTTGGTGAAGATGTTTGGTCAAAAACCAGAGAAGCGTTACAAATGGGAGCCTGTGAAGGATGATGTTGAGCTTGGAAACTCTACTTACCCAATGGTTCTTGTTCAAGTTCCTATGTACAACGAAAGAGAGGTTTATCAGCTGTCCATTGGAGCAGCATGTGGCCTTTCTTGGCCTTCAGATAGGATCATCATACAAATTCTTGATGACTCCACTGACCCAACAATCAAGGAGTTGGTGAAGGTTGAATGCAGTAGATGGAGAAGCAAAGGGGTGAATATAAAGTATGAGGTGAGGGATAACAGAAGTGGGTACAAAGCAGGTGCTCTTAAAGAGGGAATGAAACGCAGCTACGTGAGCCAATGTGATTATGTTGCCATCTTTGATGCTGATTTTCAACCACAACCTGATTTCCTCTGGCGCACCATTCCATTCCTTGCCAACAATCCTCAACTAGCTCTTGTTCAGGCGCGCTGGAAGTTTGTGAATGCCGATGAATGTTTGATGACCAGGATGCAAGAAATGTCACTAGATTACCATTTCACAGTGGAACAAGAAGTGGGGTCTTCAACTTTCGCCTTCTTTGGGTTCAATGGAACTGCTGGAGTATGGAGAATTTCGGCACTGAATGAGGCAGGTGGATGGAAGGAAAGGACCACAGTGGAAGACATGGACCTGGCTGTAAGAGCCAGTCTCAAAGGATGGAAATTCTTATACCTGTCCAATCTACAGGTTAAAAATGAACTACCAAGCACATTGAAGGCCTATCGCTACCAACAGCACCGGTGGTCTTGTGGGCCAGCAAATCTTTTCAGGAAAATGGTCATGGAGATTATAACAAACAAGAAAGTGTCTTTGTGGAAGAAGATTCATGTGATTTACAGCTTCTTCTTTGTTCGGAAAGTGGTGGCACACATCAACACCTTTTTGTTCTACTGCATTGTGTTACCTGCAACAGTTTTGGTGCCTGAGGTCGTGGTCCCCAAGTGGGGTTCTGTGTATATCCCTTCCATCATCACTCTTCTAAATGCAGTTGGAACTCCAAGGTCGCTTCATTTAATGGTGTTCTGGATTCTCTTTGAGAATACCATGTCTCTGCATCGAACAAAGGGAACAGTTATCGGTCTACTAGAGGCTACAAGAGTGAATGAATGGGTTGTCACTGAAAAACTTGGAGATGCTCTCAAGGGTAAAGGTGGAGGTAAAACATTCAAGACGCTTAGATTTAGGATTGGAGACAGGATTCACATGTTAGAATTACTTATTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATCTTATGTTCGGGAAAAACCACTTCTTCATATTCCTATATATCCAAGCATTTGCTTTCTTCATCATGGCATTTGGATATATTGGCACTTTTGTTCCCAACTCCTAG 1566 0.4342 MDTFQEADVTSQIGLVWSQIREPLIVPLLRVSVFLCLAMSLMMFVERVYMSIVICLVKMFGQKPEKRYKWEPVKDDVELGNSTYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVKVECSRWRSKGVNIKYEVRDNRSGYKAGALKEGMKRSYVSQCDYVAIFDADFQPQPDFLWRTIPFLANNPQLALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTFAFFGFNGTAGVWRISALNEAGGWKERTTVEDMDLAVRASLKGWKFLYLSNLQVKNELPSTLKAYRYQQHRWSCGPANLFRKMVMEIITNKKVSLWKKIHVIYSFFFVRKVVAHINTFLFYCIVLPATVLVPEVVVPKWGSVYIPSIITLLNAVGTPRSLHLMVFWILFENTMSLHRTKGTVIGLLEATRVNEWVVTEKLGDALKGKGGGKTFKTLRFRIGDRIHMLELLIGFYLFFCGCYDLMFGKNHFFIFLYIQAFAFFIMAFGYIGTFVPNS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2541 521 CDD CESA_CaSu_A2 85 321 - -
Lja5g2541 521 Pfam Glycosyl transferase family group 2 178 369 IPR001173 -
Lja5g2541 521 PANTHER - 4 520 - -
Lja5g2541 521 SUPERFAMILY Nucleotide-diphospho-sugar transferases 82 363 IPR029044 -
Lja5g2541 521 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 76 302 IPR029044 -
Lja5g2541 521 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 4 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2541 Lja-Chr5 49961740 49967466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2541 8 520 Miscellaneous Gene Families AT5G03760 79.377 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2541 K13680 - gmx:100810016 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2541 5 49961740 49967466 Lja5g2541 5 49961740 49967466 ECH
Lja1g0751 1 7276788 7283655 Lja5g2541 5 49961740 49967466 PCT