Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0751 ATGGAACGCATTTCTTCAACTACAACTCTCCCATATGCATTCCAAGGGGCTAGGGATGACATTACCATGCAGCTTTCGTTGATTTGGAGTCAAATAAAAGCACCATTGGTTGTCCCTTTGCTGAGATTAGCAGTGTTTTTTTGTTTGATCTTGTCGGTGATGATGTTCATTGAGAGGGTTTACATGGGGGTTGTCATTACTCTGATCAAGGTGTTTGGTAGAAAGCCAGAGAAGCGTTACAAATGGGAGCCAATGAAGGATGACATTGAGTTGGGAAACTCTTCTTACCCAATGGTTCTTGTTCAAATCCCCATGTACAATGAAAGAGAGGTTTATCAACTCTCAATTGGAGCTGGATGTGGGCTTTCTTGGCCTTCAGATAGGATCATTATACAAGTCCTTGATGACTCCACTGATCCAACAATCAAGGAGCTGGTGCAGCTGGAATGCCAAAGATGGGCAAGCAAAGGAGTGAACATAAAGTATGAGGTGAGGGACAACAGGAATGGATACAAAGCAGGGGCATTGAAAGAAGGCATGAAACATAGCTACGTGAAGCAATGTGATTTTGTTGCTATCTTTGACGCTGATTTTCAGCCAGAGCCTGATTTCTTGTGGCGCACTGTGCCATTCTTGGTGCACAATCCTCAACTCGCCCTCATTCAGGCTCGGTGGAAATTTGTGAATTCAGATGAATGTTTAATGACAAGAATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTATGCCTTCTTTGGCTTCAATGGGACTGCTGGAATATGGAGAATTTCGGCGCTGAATGAAGCTGGTGGGTGGAAGGATAGGACCACAGTGGAAGATATGGACCTGGCTGTACGAGCAAGTCTCAAAGGATGGAAATTCCTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGTACTCTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGACCAGCCAATCTGTTCAAGAAAATGGTCTTGGAGATTGTAAGAAACAAGAAAGTGTCATTGTGGAAGAAGATACATGTGATTTACAGTTTTTTCTTTGTTCGGAAAGTCGTAGCACACATCAACACATTTGTGTTCTATTGCATCATATTACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTTCCAAAATGGGGAGCTGTTTACATCCCTTCTGTTATCACAATTCTAAATGCAGTTGGAACTCCAAGGTCACTACATTTAATGGTCTTCTGGATTCTCTTTGAAAATGTTATGTCTCTGCATCGAACAAAGGCAACGATTATCGGTCTACTCGAGGCTAGTCGAGTGAATGAATGGATTGTCACTGAAAAGCTTGGAGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCCAAGAAGCCTAGATTCAGGGTTGGAGACAGGGTTCACATGTTAGAACTTGGTGTTGGATTCTACCTCTTCTTTTGTGGCTGCTATGATGTTATGTTTGGGAAAAACCACTACTTCATCTACCTATTTATCCAAGCATTTGCCTTCTTCATCATGGCATTTGGATATGTTGGCACCTTTGTTCCCAACTCCTAG 1602 0.4307 MERISSTTTLPYAFQGARDDITMQLSLIWSQIKAPLVVPLLRLAVFFCLILSVMMFIERVYMGVVITLIKVFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQIPMYNEREVYQLSIGAGCGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDFVAIFDADFQPEPDFLWRTVPFLVHNPQLALIQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGIWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFKKMVLEIVRNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIILPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLMVFWILFENVMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKAKAGGKAPKKPRFRVGDRVHMLELGVGFYLFFCGCYDVMFGKNHYFIYLFIQAFAFFIMAFGYVGTFVPNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0751 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Lja1g0751 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 374 IPR029044 -
Lja1g0751 533 PANTHER - 1 532 - -
Lja1g0751 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE 1 532 - -
Lja1g0751 533 Pfam Glycosyltransferase like family 2 98 332 - -
Lja1g0751 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0751 Lja-Chr1 7276788 7283655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0751 1 532 Miscellaneous Gene Families AT5G03760 81.426 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0751 K13680 - gmx:100810016 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0751 1 7276788 7283655 Lja1g0751 1 7276788 7283655 ECH
Lja1g0751 1 7276788 7283655 Lja5g2541 5 49961740 49967466 PCT