Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2435 ATGGAAGATACTAAATCAAGGTTCAAGAGGATCTGCGTCTACTGTGGAAGCAGTTCTGGGAACAAAGCTAGTTACCAAGAAGCTGCTGTCGAACTAGGCAAGGAGATGGTGGAGAGAAGGATTGATTTGGTCTATGGAGGTGGTAGCGTGGGGCTGATGGGTCTTGTTTCTCAGGCAGTTCATGATGGTGGACGCCATGTTCTTGGTGTTATCCCAAAAAGTCTCATGCCAAGAGAGATAACTGGTGATCCTATTGGTGAAGTGAGAGCTGTATCTGATATGCACCAAAGGAAAGCTGAGATGGCTCGTCAAGCTGATGCCTTCATTGCCCTTCCGGGTGGATATGGAACTCTTGAAGAATTGCTGGAAATCATTACATGGGCTCAGCTTGGGATCCACAGCAAACCGGTGGGCCTGTTGAATGTGGATGGATTTTACAATTCCCTGTTGTGTTTCATTGACAAGGCCGTTGATGAAGGCTTTATCTCACCAAAAGCACGTCGCATAATCGTGTCAGCACCCACAGCCAAACAATTGGTGAGGGAGCTAGAGGAACATGTACCTGAGAAAGATGAAGTTGTATCCAAGTTGGTGTGGGAAGAGAGGCTAAGTTACGTGCCCGAATCAGAAGTTGCATTGTGA 642 0.4704 MEDTKSRFKRICVYCGSSSGNKASYQEAAVELGKEMVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPKSLMPREITGDPIGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHSKPVGLLNVDGFYNSLLCFIDKAVDEGFISPKARRIIVSAPTAKQLVRELEEHVPEKDEVVSKLVWEERLSYVPESEVAL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2435 213 Pfam Possible lysine decarboxylase 53 182 IPR031100 -
Lja5g2435 213 SUPERFAMILY MCP/YpsA-like 7 186 - -
Lja5g2435 213 PANTHER LOG FAMILY PROTEIN YJL055W 4 210 - -
Lja5g2435 213 Gene3D - 1 185 - -
Lja5g2435 213 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG7 4 210 - -
Lja5g2435 213 TIGRFAM TIGR00730: TIGR00730 family protein 9 185 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2435 Lja-Chr5 47190001 47194919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2435 K22522 - gmx:100816928 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2435 5 47190001 47194919 Lja5g2435 5 47190001 47194919 ECH
Lja1g0654 1 6097403 6101360 Lja5g2435 5 47190001 47194919 PCT