Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0654 ATGGCAGAGACTAAGAAATCCAGGTTCAAGAGGATTTGCGTGTTCTGTGGGAGCAGTCCAGGGAAGAAACCTAGTTACCAAGAAGCTGCTGTTGAACTTGGCAAGGAGCTGGTGGAGAGAAGGATTGATTTGGTGTATGGAGGTGGTAGCGTGGGGCTGATGGGTCTTGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTTGGGGTTATCCCAACAAGTCTCATGCCAAGAGAGATAACAGGTGCTCCAATTGGGGAAGTGAGAGCCGTGTCTAACATGCACCAAAGGAAAGCTGAGATGGCTCGTCAAGCTGATGCCTTCATTGCCCTCCCTGGAGGATATGGAACCCTTGAAGAATTGCTGGAAGTAATAACTTGGGCTCAGCTTGGGATCCACACCAAACCTGTTGGTCTGTTGAATGTGGATGGATTTTACAATTCCTTGTTGTGTTTCATTGACAAGGCTGTTGATGAAGGTTTTATATCCCCCACAGCTCGTCGCATTATCGTGTCAGCTCCCACAGCCAAACAATTGATGCTAGAGCTCGAGGAACATGTTCATGAGCAAGAGGAGTTTGCATCCAAATTGGTGTGGGAAGACAGACTAACTTACGTGACTGAATCAGAAGAGTTGCCATGTGATTAA 651 0.4762 MAETKKSRFKRICVFCGSSPGKKPSYQEAAVELGKELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVSAPTAKQLMLELEEHVHEQEEFASKLVWEDRLTYVTESEELPCD* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0654 216 Pfam Possible lysine decarboxylase 54 181 IPR031100 -
Lja1g0654 216 Gene3D - 1 186 - -
Lja1g0654 216 TIGRFAM TIGR00730: TIGR00730 family protein 10 185 IPR005269 GO:0009691|GO:0016787
Lja1g0654 216 PANTHER LOG FAMILY PROTEIN YJL055W 5 211 - -
Lja1g0654 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG7 5 211 - -
Lja1g0654 216 SUPERFAMILY MCP/YpsA-like 8 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0654 Lja-Chr1 6097403 6101360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0654 K22522 - gmx:100792663 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0654 1 6097403 6101360 Lja1g0654 1 6097403 6101360 ECH
Lja1g0654 1 6097403 6101360 Lja5g2435 5 47190001 47194919 PCT