Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2422 ATGTCGATGAAGGAGTGCAATCATCACAAGGGAGCGAAGAGGAGGGCCTTCCGCCGCGTATTCTGCTGCATCGTGGTCTTCCTCTTCATCGTCCTTGTGACAATCCTCCTCATATGGGCAATCTTACGGCCAACAAAACCCACCTTCATCCTCCAAGACGTAACCGTCTACGCCTTCAACGCCACCGTACCGAACTTCCTAACCACCAACTTCCAAGTCACGTTAACCTCACGCAACCCCAACGAACACATCGGAGTCTACTACGACCGCCTCAGCACCTACGTCACTTACCGGAGCCAGCAGGTGACCTACCGGACCGCCATCCCGCCGTCGTACCAGGGCCACAAAGAGTTCGACGTTTGGTCGCCGTTTGTGTCCGGTAACAGCGTCCCCGTCGCGCCGTTTAATTTTGTTGGGCTTGGGCAGGACCAGGCTAACGGCAATGTTTTCATCACCGTTAAAGTTGACGGCAGGGTCCGGTGGAAGGTTGGTGCGTTTGTTTCCGGCCGTTATCATCTCTATGTGCGGTGTCCGGCGTATATCTCACTTGGGTCGCGCGGTAACGGCGTCTTTGTCGGAGAAAATAACGCCGTTAAGTATCAGGTGGTCCAGCGCTGCTCCGTTAGCGTTTGA 633 0.5513 MSMKECNHHKGAKRRAFRRVFCCIVVFLFIVLVTILLIWAILRPTKPTFILQDVTVYAFNATVPNFLTTNFQVTLTSRNPNEHIGVYYDRLSTYVTYRSQQVTYRTAIPPSYQGHKEFDVWSPFVSGNSVPVAPFNFVGLGQDQANGNVFITVKVDGRVRWKVGAFVSGRYHLYVRCPAYISLGSRGNGVFVGENNAVKYQVVQRCSVSV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2422 210 Pfam Late embryogenesis abundant protein 74 176 IPR004864 -
Lja5g2422 210 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 5 210 - -
Lja5g2422 210 PANTHER OS05G0367900 PROTEIN 5 210 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2422 Lja-Chr5 46374550 46375828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2422 - - gmx:100788592 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2422 5 46374550 46375828 Lja5g2422 5 46374550 46375828 ECH
Lja1g0649 1 6035329 6036441 Lja5g2422 5 46374550 46375828 PCT