Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0649 ATGTCGGTGAAGACGTGCGACCACCACAAGGGGAAGAAGAAGAAAATCTTCCGGCGAATCTTCTGGGGCATCGTGATCTTCCTCTTCATCGTCCTCGTAACAATCCTAATCATCTGGGCAATCCTGAAGCCCAATAAACCCACCTTCACACTCCAAGACGTAACCGTCTACGCCTTCAACGCCACAATGGCCAACTTCCTCACCTCCAACTTCCAAGTCACGCTCTCCGCCCGCAACCCTAACGACAAGATCGGCGTCTACTACGACCGCCTTGACGCCTACATCACCTACCAGAGCCAGCAAGTCACCTACCGCACCGCCATCCCTCCGTCGTACCAGGGCCACAAGGAGATGGACGTTTGGTCCCCGTTTGTATACGGCACCAACGTCCCGGTGGCTCCCTACAATTTTGTTACTCTAAGCCAGGACCAGGCCAACGGTAACGTCCTCGTCACCGTTAAAGTTGACGGCAAGGTTCGATGGAAGGTCGGCGCTTTTGTCACCGGCCACTACCACCTCAACGTCCGGTGCCCTGCTTTTATTACCTTCGGCGCCAGAAGCAACGGCGTCGCCGTTGGTGATAGCGGCGCCGTTAAGTATCAGCTCGTCCAGCGCTGCTCCGTCAGCGTCTGA 633 0.5608 MSVKTCDHHKGKKKKIFRRIFWGIVIFLFIVLVTILIIWAILKPNKPTFTLQDVTVYAFNATMANFLTSNFQVTLSARNPNDKIGVYYDRLDAYITYQSQQVTYRTAIPPSYQGHKEMDVWSPFVYGTNVPVAPYNFVTLSQDQANGNVLVTVKVDGKVRWKVGAFVTGHYHLNVRCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0649 210 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Lja1g0649 210 PANTHER OS05G0367900 PROTEIN 4 210 IPR044839 GO:0098542
Lja1g0649 210 PANTHER LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0649 Lja-Chr1 6035329 6036441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0649 14 177 EF-hand Containing Proteins AT5G21130 20.833 2.88e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0649 - - gmx:100788592 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0649 1 6035329 6036441 Lja1g0649 1 6035329 6036441 ECH
Lja1g0649 1 6035329 6036441 Lja5g2422 5 46374550 46375828 PCT