Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2389 ATGCATGGGAAATGCTACCGTTGGAGGGCAGTTCTGGAAAATCCAGCTTCTGCTGTGGCTGAGAGCGTTAGCACAATGGAATCTGAAAATGGAGTTGCAATGGAGGACGAGAAACATGTTATTGGGGAAACAACCAAGGAGAGCCCAAATAAAGAAGCTGAAAACAACCCTAATGCAGAAATGCAGGCCAAGAATGAAGTATCTGAACCGACAATAGAACCTGAAAGCCACAACTCAACAGCAAGTAAAATCCCAAAACGTTCCAAGGAGCCTGGTAGCAAGAATGGTGTTGCTGGAAAGAACAATAAACCTGCAACCAAAGATAAACACAATGTGAAGACCTCAACTTCATCATCTCAAACACAGAGGCCAAACATTTCCAAGAGCCTTTCTTTCCCAGCCAAATCAGCTCGCGGAGATGGTATGAAGAAAAGCACTGATGGAATTCTTGTGAAGACAGAAAGTAAGCTTGCTAATCAAGGTAATGGGGTTAGATCTGCGACTTCCGTTCGACTTTCGAGCAGGTTGACAAACTCTGAAGTAAACTCTAAGGAGGCAAAGACAAATCCTGGAAATTCTAACCAAAGGACTTCTTTGGCATCAATGAATAGCTTTAAACGCTCTGTGTTTGGAAGGTCTACTTCAGTTAAGGCAGTTGCCAAGAGTCTTACATCTGAGGCATCCATACCTGTTGATCAGATTTCAAACCCAGCAAAAACTGAAAGATCAAATAAAGAGGATGATGATTCTCATTCCACTACTTCAAGTGCTACGCGGAGGAACAGTGGTTCTGGATTTTCCTCCAGATTGCAAGAACGAGCTGAAAAGCGGAAGGAGTTCTTCTCGAAGATAGAAGAGAAAATTCAGGAAAAGGAGGCAGAGAAAACTAACCTGCAAGAGAAATCAAAGGAAAACCAGGAGGTGGAGATCAAACAAATGAGGAAGAAGATGACATTCAAAGCAGCTCCAATGCCAAATTTCTATAAGGAACCTCCTCCAAAAGTTGAACTGAAGAAGATACCTACAACACGCCCAAAATCCCCAAAACTTGGAAGGAACAAAGGATCTGCTGTGAACACCAATTCAGAGGATAAATCTTGTTCTAGCCCTCGTGTGAAGCAACAGCTGAATGATTCAACCAAGGCAAAGATAAAGGGATATAAAGATGTGATTTCAAAGAAACAAAACAAAAAATCTCAAGCCAAGCTGCAGCCTCAGGAAACTGCAACCAACAAAACCGAAAGAGATTCTACAAGTAAGGTCTCAGAAACCGACCAAGGTGCAAAAGCTGGTGTAGGAAGCAATGAAGAATGTCAAGATCTACCAGTTAGCAATGCTGAATTCCAAAATGGCATGGTCCTAGAATCCCAAAATGACCTTGCTGAGAATGGTGATCTGGCCTTGAATTCATCCACAACTGAGATTGTTTCATATGAGGTTACTGTTGGAGTATAG 1455 0.4227 MHGKCYRWRAVLENPASAVAESVSTMESENGVAMEDEKHVIGETTKESPNKEAENNPNAEMQAKNEVSEPTIEPESHNSTASKIPKRSKEPGSKNGVAGKNNKPATKDKHNVKTSTSSSQTQRPNISKSLSFPAKSARGDGMKKSTDGILVKTESKLANQGNGVRSATSVRLSSRLTNSEVNSKEAKTNPGNSNQRTSLASMNSFKRSVFGRSTSVKAVAKSLTSEASIPVDQISNPAKTERSNKEDDDSHSTTSSATRRNSGSGFSSRLQERAEKRKEFFSKIEEKIQEKEAEKTNLQEKSKENQEVEIKQMRKKMTFKAAPMPNFYKEPPPKVELKKIPTTRPKSPKLGRNKGSAVNTNSEDKSCSSPRVKQQLNDSTKAKIKGYKDVISKKQNKKSQAKLQPQETATNKTERDSTSKVSETDQGAKAGVGSNEECQDLPVSNAEFQNGMVLESQNDLAENGDLALNSSTTEIVSYEVTVGV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2389 484 MobiDBLite consensus disorder prediction 353 381 - -
Lja5g2389 484 PANTHER PROTEIN WVD2-LIKE 4 26 484 IPR044833 GO:0008017
Lja5g2389 484 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN 26 484 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 239 254 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 270 316 - -
Lja5g2389 484 Pfam Targeting protein for Xklp2 (TPX2) domain 269 335 IPR027329 -
Lja5g2389 484 MobiDBLite consensus disorder prediction 382 396 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 255 269 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 111 132 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 17 456 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 152 238 - -
Lja5g2389 484 Coils Coil 281 311 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 31 50 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 51 65 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 397 412 - -
Lja5g2389 484 MobiDBLite consensus disorder prediction 438 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2389 Lja-Chr5 45375821 45381364 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2389 - - gmx:100798810 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0615 1 5660453 5663726 Lja5g2389 5 45375821 45381364 PCT