Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0615 ATGGAATCTGAAAATGAAGTTGCTGTGGAGGAAGAGAAACGTGTTATTGGGGTAACAACTGAGGAGAACATAGGTAAAGAAGCTGTAAGCGATCATAGTGATAATGCAGAACTTCAGACCAAGAATGAAGTTTCTAAACCCACAGTGGAGGCTGAAAGTGAATCTCCCATTTCTTCTGGTGACACTGTTGCAGTTGAAGCCTCTAAAACTTCTTCTGCAAGTAAAAATTCAAAGCCTGCTAAGGAACCTGGTGGCAGAGCAATTGCTGCTTCTAAGAGCAACAAAACTGCCAAAGATAAGCCAATTTTGAAGGGTTCAAGGTCAGTATCTGAAAAACAAAGGCCAACCCTTTCTCAGAGCTTTTCTTTCCCAGCCAAATTGGCCTGTGAAGACGCTATGCATAAAAGCACTGATGGGCATCTTGTGAAACGTTCTGGAGGTTCTAACAAGAAGACTTCTTTGACATCCATGCCTGGTTTGCAACGTTCTGCGTTTGGAAGGTCTACTCAAGTTATTGCACTCACCAAGAGCCATAAATCTGAGGCATTGTTACCTGTTGATCAGTTTTCAAACCCAGCAAAAACTGCAACACCAAATAAAGAGGATGATGATTCTCATTCCACAACTTCAAGTGCTAATCAGAGGAACAGTGGCTGTGGATTTTCCTTCAGATTGGAAGAAAGAGCTGAAAAGAGGAAGGAGTTTTTCTCAAAGTTGGAGGAAAAAGTTCTAGCCAAGGAAGCAGAGAAAACAAACCAACAAGAGAAATCAAAGGAAAACCAAGAGGCAGAGATCAAGAAATTGAGGAAGAGCTTGGCATTCAAAGCTGCTCCAATGCCAAGTTTCTATAAGGAACCACCTCCTAAGGTTGAGCTTAAGAAGATACCAACAACCCGTGCAAGATCCCCAAAACTTGGAAGGCATAAAGCATCTGCTATGAACAACAACAATTCAGAACAAGATAAGTATCACGCCAATGATTCAACTAAGGGAAAGAAAAAGGGTCATAGTGATGTGATTTCAAAGAAACCAATCAAGAAAACCCAGGTCAAGTTGAAATCTCAGGAAAATGCTACCACAGAAAGCAATGGAGAATGCCAACATCCACATGCTAACAATTCTGAATGCAAAAATGACATTGAGCTGCCATCCGAGACAGATAATCCTCAACATAGTGCACTGCTTTTAAATTCAACTACACCTGAGCTAGTAGATATGTAA 1221 0.4111 MESENEVAVEEEKRVIGVTTEENIGKEAVSDHSDNAELQTKNEVSKPTVEAESESPISSGDTVAVEASKTSSASKNSKPAKEPGGRAIAASKSNKTAKDKPILKGSRSVSEKQRPTLSQSFSFPAKLACEDAMHKSTDGHLVKRSGGSNKKTSLTSMPGLQRSAFGRSTQVIALTKSHKSEALLPVDQFSNPAKTATPNKEDDDSHSTTSSANQRNSGCGFSFRLEERAEKRKEFFSKLEEKVLAKEAEKTNQQEKSKENQEAEIKKLRKSLAFKAAPMPSFYKEPPPKVELKKIPTTRARSPKLGRHKASAMNNNNSEQDKYHANDSTKGKKKGHSDVISKKPIKKTQVKLKSQENATTESNGECQHPHANNSECKNDIELPSETDNPQHSALLLNSTTPELVDM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0615 406 MobiDBLite consensus disorder prediction 277 406 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 135 165 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 40 78 - -
Lja1g0615 406 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN 145 360 - -
Lja1g0615 406 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) FAMILY PROTEIN 1 143 - -
Lja1g0615 406 PANTHER PROTEIN WVD2-LIKE 4 145 360 IPR044833 GO:0008017
Lja1g0615 406 PANTHER PROTEIN WVD2-LIKE 4 1 143 IPR044833 GO:0008017
Lja1g0615 406 Coils Coil 236 271 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 385 399 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 1 122 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 351 371 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 181 220 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 146 165 - -
Lja1g0615 406 MobiDBLite consensus disorder prediction 7 39 - -
Lja1g0615 406 Pfam Targeting protein for Xklp2 (TPX2) domain 221 290 IPR027329 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0615 Lja-Chr1 5660453 5663726 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0615 - - gmx:100794426 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0615 1 5660453 5663726 Lja5g2389 5 45375821 45381364 PCT