Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2381 ATGGATTTGGAGGTAGTTCCTTCTTCCAGGGATTTGTTGAAATGTTGCGACTGCGGGTGTAGGTGTTCCTTCCAAACTCAATCCTCAGGGACTTGGATGCGTTCTGTTAAACGAAAGCATGATGAGTTTGAAATGGAGAGCCAATTGCATATGCCTGCGATTGCGCGGGTCGACATGGAGAACGAATGTATGGTCTTGCGCGAGATGGTCAGTGCGCAGCAAAAATCCATCCAAGATTTGAATGGTGAATTGGAGGAAGAGAGAAATTCTTCATCTACAGCTGCGAATGAGGCCATGTCGATGATCTTGAGGTTGCAGAGGGAAAAAGCAGAGATTCAAATGGAAGCACGTCAATTCAAGCGATTTGCAGAGGAGAAGATGACACACGATCAGGAGGAGTTCTTATCTTTGGAGGATTTGTTGTACAAGAGAGAACAGATAATCCAGTCACTTACATGTGAAGTTCAAGCTTACAAGCACAGGATGATGAGTTTTGGGTACACTGAAGATGAGGTGGAGGGTGATCAATGTGAATTTCCTCCCTATGAATACCCTCCTTTGAAATGTAACGTGATGTATAATGCCGTAGATGCTGATAATGATGACACAGATGTTGAGAAATATGTATTTGGTGAAACTCCGACTGACCGTTTGAGGAACTTGGAAAATAGGATTTCCCAAATGGAGAGAACCCCCAATTATAGCCAGGTGGATGGGGAATTTACAGGAAAAAATGTTCTAGATAAGGTAATTGTTGGACAGTCTCCGAGGTGGCCAAAACATTCTAGAAAAGTTTCTTGTGATTCAACATCATTTGGTGGGATGGGGAGAGAAACAGGTCCAGAGTTTCCGACGGACTCTCCCAAGCTCGATAGAAACAGCCGTAAGGAATTTTTTTCACAATCAGAGGAGGACCATTCCAATTTGAAGAAGGCAGATAATGGTTCAGAAGGTGATGATACGAGTGACAGAATTTATACAATTGACTCTATTCATTCTGGGGCACCATATAATGGATTTACAGATTCCAGAGCTGGAGCTGGTGCTTTCGAAGATTGTGCAACCACTCCAATGGAATCAGGGAATCTTGCTGATTTTGAGGATCCCTACGTAAAGAAGCTTTACATGAGGCTTCAGGCACTTGAGGCTGATAGGGAATCAATGAGGCAGGCACTCATTTCAATGCGCACAGATAAAGCACAGCTTGTGTTGCTAAAGGAAATAGCCCAACATTTGTGCAAAGATATGTCACTGGAAAGAAAAGTGACTGCAAGGAAGCCATATACTGGTGGCAGGTCTTCATTCTTGTCAATTTTTAAGTGGGTCGCATCATTTGTTTTCTGGAGAAAGAAAGCACAGCAAAGCAAGTATATGTTCGGGCTACCTGCTGACAGTGTGGGTTTGCTGCTGCTCCTGGACAAAGGAACACGCACAAGGCCATGGAGATGTATTTCTAATACACAATTGGGAGATTAG 1476 0.435 MDLEVVPSSRDLLKCCDCGCRCSFQTQSSGTWMRSVKRKHDEFEMESQLHMPAIARVDMENECMVLREMVSAQQKSIQDLNGELEEERNSSSTAANEAMSMILRLQREKAEIQMEARQFKRFAEEKMTHDQEEFLSLEDLLYKREQIIQSLTCEVQAYKHRMMSFGYTEDEVEGDQCEFPPYEYPPLKCNVMYNAVDADNDDTDVEKYVFGETPTDRLRNLENRISQMERTPNYSQVDGEFTGKNVLDKVIVGQSPRWPKHSRKVSCDSTSFGGMGRETGPEFPTDSPKLDRNSRKEFFSQSEEDHSNLKKADNGSEGDDTSDRIYTIDSIHSGAPYNGFTDSRAGAGAFEDCATTPMESGNLADFEDPYVKKLYMRLQALEADRESMRQALISMRTDKAQLVLLKEIAQHLCKDMSLERKVTARKPYTGGRSSFLSIFKWVASFVFWRKKAQQSKYMFGLPADSVGLLLLLDKGTRTRPWRCISNTQLGD* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2381 491 ProSiteProfiles GTD-binding domain profile. 61 159 IPR007656 -
Lja5g2381 491 Coils Coil 70 125 - -
Lja5g2381 491 MobiDBLite consensus disorder prediction 258 324 - -
Lja5g2381 491 Pfam Zein-binding 66 155 IPR007656 -
Lja5g2381 491 MobiDBLite consensus disorder prediction 284 324 - -
Lja5g2381 491 Coils Coil 371 398 - -
Lja5g2381 491 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 466 - -
Lja5g2381 491 PANTHER BNAANNG28530D PROTEIN 1 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2381 Lja-Chr5 45067342 45071379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2381 - - aprc:113872114 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2381 5 45067342 45071379 Lja5g2381 5 45067342 45071379 ECH
Lja1g0604 1 5553917 5558303 Lja5g2381 5 45067342 45071379 PCT