Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0604 ATGGATTCTGAATCTTCGCTGAACAATGGCGGTTGCGATTGCAATTCCTCCACCTCGGCGGCTCAATCTTCTTCTTCTTCTTCAGCGAATTGGCTCCGATCTGTGAAACGGAAGATTGATGAGCTCGAAAAGGACACCAGATTCGCCGTCCCGGAGTTGGATTCCGTTGATGATCCGGTGGCGCGGGTGGAAATCAGGAACGAATGCGCCGCGTTGCGGCAAGCGCTCACCACTCAGCAACAAGCCATACAGAGTTTGTATGTTGAATTGGAGGAGGAGAGGGATGCTGCGTCATCTGCTGCCAATGAGACCATGTCGATGATATTGAAGCTGCAGAGTGAGAAGGCTGAACTTCAGATGGAGGCGCGCCAGTTCAAGCGCTTCGTGGAGGAGAGGACCTCACATGATCAGCAAGAGCTGTTGGCATTAGAGGATTTGTTGTATAGGAGAGAGCAGACCATTCAGTCGCTCACTCTTGAAGTTGAGGCCTATAAGCACAGGTTGATGAGTTTTGGCCTCACTGAATCTGAGGCTGAGGGTGATGAGTATGAGTTTCCACCTTATGAGTACCCTCCTTTGAAATGTAATGTGATGCATCCGATTATGGATGTTGCCGATGATGATGATGAAGATGGGGGTATTGAGAAATATATGTTCGGTGAAACACCTAAGGACCGTTTGCGGAACTTGGAAAACAGGATATCTCAAATGGAGAGAAGTCCCACTTATCACCAAATGGATGGGGATTTTACAGGAAAGAATATTCTAGAGAAGGTGATAGTTGGACAATCTCCGAGACGGGGTAGGCATTCCCGGAAATTTTCGTGTGACTCGTCTTCGTTATGTCCTGAGATTATGATGGACTCTCCGAGGCTCAACGGTAGCTTTAGGAAGGCAGATACTGTGTCGGAGGATATTTCGAATTTGAAGAAGGCAGATATTGCATCAGAAGCTGGTGATGATATGACTCCAAGGGTGTATACAGTTGATTCTGTGTTCAAAGCTGGAGGTGGTGTTTATGATGATTATGTAACCACTCCAAGAGACTTTGGGAACCATGGTGACTTTGAAGATCCATACATGAAGAAGCTTTACATGAGGCTTCAAGCACTTGAGGCGGATAGGGAATCAATGAGGCAGGCAATCATTTCAATGCGCACCGATAAAGCACAGCTTGTTATGCTGAAGGAAATAGCTCAACAGTTATGCAAAGAGATGTCACAGCAAAGGAAAATGACACCAGGATCCTTTGTTGGTGGCTTTTCATTCTTGACAGTTTTTAAGTGGATATATTCAATTGTTTTCTGGAGAAAGAAACCTCATCAAATCAAGTACATGTTCGGGCTTCCATCAGAAAGTGTTGGCTTGCAAACGCTCATTGACGAAGAACCTCAAGTAAAGTCATGGAGGTATCTTTCAAATACACAAGTGGGTGATTAG 1440 0.4562 MDSESSLNNGGCDCNSSTSAAQSSSSSSANWLRSVKRKIDELEKDTRFAVPELDSVDDPVARVEIRNECAALRQALTTQQQAIQSLYVELEEERDAASSAANETMSMILKLQSEKAELQMEARQFKRFVEERTSHDQQELLALEDLLYRREQTIQSLTLEVEAYKHRLMSFGLTESEAEGDEYEFPPYEYPPLKCNVMHPIMDVADDDDEDGGIEKYMFGETPKDRLRNLENRISQMERSPTYHQMDGDFTGKNILEKVIVGQSPRRGRHSRKFSCDSSSLCPEIMMDSPRLNGSFRKADTVSEDISNLKKADIASEAGDDMTPRVYTVDSVFKAGGGVYDDYVTTPRDFGNHGDFEDPYMKKLYMRLQALEADRESMRQAIISMRTDKAQLVMLKEIAQQLCKEMSQQRKMTPGSFVGGFSFLTVFKWIYSIVFWRKKPHQIKYMFGLPSESVGLQTLIDEEPQVKSWRYLSNTQVGD* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0604 479 Coils Coil 73 93 - -
Lja1g0604 479 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g0604 479 Coils Coil 361 388 - -
Lja1g0604 479 ProSiteProfiles GTD-binding domain profile. 67 165 IPR007656 -
Lja1g0604 479 PANTHER BNAANNG28530D PROTEIN 6 454 - -
Lja1g0604 479 Coils Coil 101 121 - -
Lja1g0604 479 Pfam Zein-binding 71 161 IPR007656 -
Lja1g0604 479 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 6 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0604 Lja-Chr1 5553917 5558303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0604 - - gmx:100797605 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0604 1 5553917 5558303 Lja1g0604 1 5553917 5558303 ECH
Lja1g0604 1 5553917 5558303 Lja5g2381 5 45067342 45071379 PCT