Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2329 ATGCTGACCGTGCTGCGGGTGCACCTGCCTTCCGATATTCCCATTGTTGGCTGCGAGCTCACGCCTTACGTTCTCATTCGCCGCCCCGATACCAACATTAACAACGATGATGTTCCTGAAACCGCTCCCGTTGGTGGCCATTTCTTGCGATACAAGTGGTATCGTGTTCATAGTGATAAAAAGGTCGCTGTCTGTAGCATACATCCATCTGAGCAGGCCACTCTGCAGTGCTTAGCTTGTACTAAGGCCAACATACCTGTTTCCAAAAGTTACCATTGCACCACCAAATGTTTCTCAAATGCATGGCAGCATCATCGTGTCTTACATGAACGTGCAGCAAATGCTGCTAATGAAAATGGAAATGAAGAGGAGGAAGTATTTGGGCGCTTTAATAGTTCTGGTTCAGGGGTAATCAATTCCAACTTGTCTGCCTCTGCTTTAAGTGCTAGCTTGACAAATGGGTTTGCAGCACCTCTGTATCCAGCAGCTGTCCCAAAAAGACTTGGTGGTGAAAGTTGGCATGAAGTCGGACGATCCAAGACTTATATCCCAACTGCTGATGACATTGGTCATGTTCTTAAGTTTGAATGTGCTGTAGTTGATGCAGAGACAAAGTTGCCTGTTGGACATGTGAACACTATACTAACTTCGCATGTCATTCATGCTCCCTCTCCCATTCCACGGCGAATGATACGTGTTGATGGCACGGGGCATTTAGATGCAAATGGGCGTCAGTCATCTTCAGGAACTTTTACTATTCTGTCATACAATATATTGTCTGAAGCCTGTGCCTCAAATGCTCTGTATAATTATTGCCCTCCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAGTTTGTTACGAGAAATTGTTGGTTACCGTGCAGATATTATCTGTCTTCAGGAGGTTCAAAGCGACCATTATGATGAGTATTTTGCTCCTGAACTGGACAAACATGGCTACAATGGTCTTTTCAAGAGAAAAACAACTGAGGTATCTAATGGAAACACCAACACAATTGATGGTTGTGCGACATTTTTCCGTAGAGACAGATTCTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCTCAGTCTTTAACAGATGCTATGGTTCCAACTGCTCAGAAGAAAATTGCCTTGAGTCGGCTGGTTAAGGACAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGCTAACAATCAGGGAGTTGATAATCCTGGGAAAAAACAGCTTTTTTGTGTGGCAAATACACATGTAAACGTACAACACGATTTAAAAGATGTCAAACTCTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATAGCTGCAAGCGCAGATATCCCCATGTTGGTTTGTGGAGATTTTAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCGTCACATCCTGATTTAGCAGTTGACCCACTTAATATTTTACACCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCATACTCATCTTTTGCAAGAACGGTTGGCCATGGATTTGAGCAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTAGAGTTATTGGATGAGGAGAGTTTGAGGAAGGACACTGCACTTCCCTCACCCGAATGGCCCTCAGATCATATAGCTCTTTTAGCTGAGTTTCGCTGCACTAGGAATAAATCTAGACGTTGA 1806 0.4336 MLTVLRVHLPSDIPIVGCELTPYVLIRRPDTNINNDDVPETAPVGGHFLRYKWYRVHSDKKVAVCSIHPSEQATLQCLACTKANIPVSKSYHCTTKCFSNAWQHHRVLHERAANAANENGNEEEEVFGRFNSSGSGVINSNLSASALSASLTNGFAAPLYPAAVPKRLGGESWHEVGRSKTYIPTADDIGHVLKFECAVVDAETKLPVGHVNTILTSHVIHAPSPIPRRMIRVDGTGHLDANGRQSSSGTFTILSYNILSEACASNALYNYCPPWALSWPYRRQSLLREIVGYRADIICLQEVQSDHYDEYFAPELDKHGYNGLFKRKTTEVSNGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMVPTAQKKIALSRLVKDNVALIVVLEAKANNQGVDNPGKKQLFCVANTHVNVQHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILHPHSKLVHQLPLVSAYSSFARTVGHGFEQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWPSDHIALLAEFRCTRNKSRR* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2329 601 PANTHER CARBON CATABOLITE REPRESSOR-LIKE PROTEIN 36 597 - -
Lja5g2329 601 Pfam Endonuclease/Exonuclease/phosphatase family 254 585 IPR005135 GO:0003824
Lja5g2329 601 CDD Deadenylase_CCR4 253 594 - -
Lja5g2329 601 Gene3D Endonuclease/exonuclease/phosphatase 217 601 IPR036691 -
Lja5g2329 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 36 597 - -
Lja5g2329 601 SUPERFAMILY DNase I-like 246 595 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2329 Lja-Chr5 42349822 42357448 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2329 K12603 - gmx:100819402 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2329 5 42349822 42357448 Lja5g2329 5 42349822 42357448 ECH
Lja1g0584 1 5312329 5325695 Lja5g2329 5 42349822 42357448 PCT