Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0584 ATGCTGAGCGTGCTGCGTGTGCACCTTCCCTCTGACATTCCTATTGTTGGCTGTGAGCTCACGCCTTACGTGCTCCTCCGCCGGCCTGACAAGACTGTTACCACCGATGATGCTCTCGAAACTGCCCCTCTAGACGGCCATTTCTTGCGCTACAAGTGGTATCGTGTACAAAGTGATAAAAAGGTTGCGGTTTGTAGTGTACATCCATCCGAGCAGGCCACACTGCAGTGCCTAGGTTGTGTTAAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTTTTGCATGACCGTGCTGCTAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAAGTATTTGGGCGATTTAATAATGCTGGGTCTGGGTCAATAAATACCAGCTTATCTGCCTCTGCATCAAGTGGTAGCTTGACAAATGGGTCAGCACCTCTGTATCCAGCAGCTGTTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACATATACCCCAACAGCTGATGACATCGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTCCTGTGGGACATGCAAACACTATACTAACTTCTCGTGTTATTCCTGCTCCCTCTCCTAGTCCACGCCGACTGATACCTGTTGACGGGATGGGGAATGTAGATGCAGATGGGCGTGTATCATCTTCGGGAACTTTTACTGTTTTGTCATACAATATATTGTCTGATTCATATGCTTCAAGTGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAATTTGTTGCGCGAAATAGTTGGTTACCGTGCTGATATCATTTGTCTTCAGGAGGTTCAAAATGACCACTATGAAGAGTTTTTCGCTCCTGAGCTGGACAAACATGGCTATAATGGTCTTTACAAAAGAAAAACAAATGAGGTTTTCAATGGCAATATTAATACAATTGATGGTTGTGCTACATTTTTCCGAAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCCATGATTCCAACCACTCAGAAGAAATCTGCTTTGAATCGACTGGTTAAGGATAATGTTGCGCTAATAGTGGTTTTAGAAGCAAAAGTTAATAACCAGCCTGTTGATAATCCAGGAAAAAGACAGCTTCTTTGTGTGGCGAATACACATGTAAATGTCCACCAAGATTTAAAGGATGTCAAACTCTGGCAGGTGCACACTCTCCTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGATATTCCAATGTTAGTTTGTGGGGACTTCAATTCAAATCCGGGAAGTGCTCCTCATGCACTTCTTGCTATGGGTAAGGTTGATCCATCACATCCTGATTTAGCGATTGACCCACTTAGCATATTGCGTCCTCACAGCAAGTTAGTTCACCAGTTGCCTCTGGTCAGTGCTTATTCTTCATTTGCAAGGACAATTGGTCTTGGATATGAGCAGCATAAGCGAAGACTTGATAGTGCAACAAATGAACCTTTATTCACAAATGTCACAAGGGATTTTATTGGCGCTCTTGACTACATATTTTACACAGCTGATTCATTGGTTGTGGAGTCATTATTGGAGCTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACTCCCTTCTCCTGAATGGTCATCAGATCATATAGCTCTCTTAGCAGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGTTGA 1803 0.4309 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDALETAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQATLQCLGCVKAKIPVSKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNAGSGSINTSLSASASSGSLTNGSAPLYPAAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDAETKLPVGHANTILTSRVIPAPSPSPRRLIPVDGMGNVDADGRVSSSGTFTVLSYNILSDSYASSDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQNDHYEEFFAPELDKHGYNGLYKRKTNEVFNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKSALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSNPGSAPHALLAMGKVDPSHPDLAIDPLSILRPHSKLVHQLPLVSAYSSFARTIGLGYEQHKRRLDSATNEPLFTNVTRDFIGALDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0584 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 595 - -
Lja1g0584 600 SUPERFAMILY DNase I-like 246 594 IPR036691 -
Lja1g0584 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Lja1g0584 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 595 - -
Lja1g0584 600 CDD Deadenylase_CCR4 252 593 - -
Lja1g0584 600 Gene3D Endonuclease/exonuclease/phosphatase 221 599 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0584 Lja-Chr1 5312329 5325695 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0584 K12603 - gmx:100808935 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0584 1 5312329 5325695 Lja1g0584 1 5312329 5325695 ECH
Lja1g0584 1 5312329 5325695 Lja5g2329 5 42349822 42357448 PCT