Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2302 ATGAAGGCTATCCAAGGTTGTGTCCTCACCGGAGTCTGGGTCATCGCCCATGAATGCGGCCACCACACCTTTAGCGACCACCAGTGGCTGGACGACAAGGTTGGCCTCATCCTCCACTCATTCCTCTTAGTCCCTTACTTCTCATGGAAATACAGCCATCACCGCCACCACTCCTGTAAGATCAAGATTTGGTCATGTGGTACAACTCTATGTTTTGATGATAACAAGAATTTATTTCTGGATGAACAATTATGGTACTCTAACATTTGTCTTGAGCGTTTTGACAAACAGCGCGACGAGGTTTTCGTTCCGAAGAAGAAATCTGCCATCGGCTGGTACTCTAAATACCTCAACAACCCTCCTGGAAGAGTCCTCACCTTAGCCCTCACACTCACCCTCGGCTGGCCACTCTACCTAGCCTTCAACGTGTCCGGCCGACCCTACAACAGATTCGCCAGCCACTACGACCCGTACGGCCCAATTTACACTGACCGTGAGCACCTCCAGATATACATCTCCGATGCAGGCGTGCTCGCGGTGTTTTACGGGCTTTACCGCCTTGCCGCGGCGTACAACCTTTCCTGGGTTCTTTCCATCTACGGTGTCCCATTGCTTGTTGTTAATGCTTTTTTGGTGTTGATTACGTACCTTCAGCACACGCATCCTGCATTGCCTCACTATGATTCTTCTGAATGGAACTGGCTCAGAGGAGCATTGGCTACTGTGGATAGGGACTATGGGATACTGAACAAGGTTTTTCATAACATCACAGACACTCATGTGGTGCATCACATGTTCTCTACCATGCCTCATTATCATGCGATGGAAGCGACCAAGGCGGTGAAGCCGATTTTGGGGGATTATTATCGGTTTGATGAGACACCGATTTTTAAAGCAATGTGGAGAGAGGCGAAGGAGTGTGTGTATGTTGAGCCTGATGAAGGGATTAAGAGCAAAGGGGTTTATTGGTACAACAATAAGCTGTGA 987 0.4863 MKAIQGCVLTGVWVIAHECGHHTFSDHQWLDDKVGLILHSFLLVPYFSWKYSHHRHHSCKIKIWSCGTTLCFDDNKNLFLDEQLWYSNICLERFDKQRDEVFVPKKKSAIGWYSKYLNNPPGRVLTLALTLTLGWPLYLAFNVSGRPYNRFASHYDPYGPIYTDREHLQIYISDAGVLAVFYGLYRLAAAYNLSWVLSIYGVPLLVVNAFLVLITYLQHTHPALPHYDSSEWNWLRGALATVDRDYGILNKVFHNITDTHVVHHMFSTMPHYHAMEATKAVKPILGDYYRFDETPIFKAMWREAKECVYVEPDEGIKSKGVYWYNNKL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2302 328 PANTHER OLEATE HYDROXYLASE FAH12 96 328 - -
Lja5g2302 328 CDD Delta12-FADS-like 3 274 - -
Lja5g2302 328 PANTHER OLEATE HYDROXYLASE FAH12 4 58 - -
Lja5g2302 328 Pfam Fatty acid desaturase 116 289 IPR005804 GO:0006629
Lja5g2302 328 Pfam Fatty acid desaturase 7 59 IPR005804 GO:0006629
Lja5g2302 328 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 96 328 - -
Lja5g2302 328 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2302 Lja-Chr5 41341783 41345003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2302 3 328 Lipid Metabolism Gene Families AT3G12120 69.325 4.56e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2302 K10256 - fve:101290788 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2302 5 41341783 41345003 Lja5g2302 5 41341783 41345003 ECH
Lja1g1223 1 12621185 12626139 Lja5g2302 5 41341783 41345003 PCT