Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1223 ATGGGGGCTGGTGGCCGAACCTCTGTTCCTCAACCCAACAGGAAGTCAGAGACTGACGCTGTGAAGCGGGTGCCGTTTGAAAAACCTCCTTTCAGCCTCAGCCAGGTGAAGAAGGCCATTCCACCTCACTGTTTTAAGCGCTCCATTCTCCGTTCATTCTCTTATGTTGTCTATGACCTCACAATAGCCTTTTTCCTCTACTATGTTGCCACCCATTATTTCCACCTCCTTCCTCGCCCTCTTGCTTTCCTAGCCTGGCCAACTTACTGGGCCATCCAAGGTTGCATCCTCACCGGAGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGACTATCAATGGCTTGATGACACTGTTGGCCTCATTCTCCACTCCTCTCTCCTTGTCCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAATACTGGTTCCCTTGACCGGGATGAAGTCTTTGTGCCCAAGCAGAAATCTTCTATAGGGTGGTACTCCAAATACCTCAACAACCCACTTGGCAGATTCCTCACAATCACTATCACCCTCACTCTAGGCTGGCCCTTGTACTTGACTTTCAATGTTTCAGGCAGGCCTTATGAAAGGTTTGCTTGCCACTTTGACCCATATGGCCCCATTTACTCCGATCGTGAACGCCTTCAAATTTATATCTCAGATGTAGGAGTACTTGCAGTGTGCTTTGGGCTTTACCATCTTGCTGTGGCGAAAGGGCTTGCCTGGGTTGTGTGTGTTTATGGAGTTCCACTGCTAGTGGTCAATGGATTCTTGGTCCTGATCACATACTTGCAGCACACTCACCCTGCATTGCCGCACTATGATTCCTCCGAGTGGGACTGGTTCAGAGGAGCTTTGGCAACAGTGGACAGGGATTATGGCATCCTGAACAAGGTCTTCCATAACATTACAGACACTCATATAGCACATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGAGGCTACAAAGGCAATAAAGCCAATTCTGGGAGAGTATTATCGGTTTGATTCAACTCCATTTTACAAGGCAATATGGAGAGAGGCAACAGAGTGTGTTTATGTTGAGCCAGATCAAGGTACTGAGACCAAAGGTGTATTCTGGTACAACAAAAAGTTGGAATGA 1155 0.4771 MGAGGRTSVPQPNRKSETDAVKRVPFEKPPFSLSQVKKAIPPHCFKRSILRSFSYVVYDLTIAFFLYYVATHYFHLLPRPLAFLAWPTYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSSLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKSSIGWYSKYLNNPLGRFLTITITLTLGWPLYLTFNVSGRPYERFACHFDPYGPIYSDRERLQIYISDVGVLAVCFGLYHLAVAKGLAWVVCVYGVPLLVVNGFLVLITYLQHTHPALPHYDSSEWDWFRGALATVDRDYGILNKVFHNITDTHIAHHLFSTMPHYHAMEATKAIKPILGEYYRFDSTPFYKAIWREATECVYVEPDQGTETKGVFWYNKKLE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1223 384 Pfam Fatty acid desaturase 85 345 IPR005804 GO:0006629
Lja1g1223 384 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 1 383 - -
Lja1g1223 384 Pfam Domain of unknown function (DUF3474) 27 65 IPR021863 GO:0016717
Lja1g1223 384 CDD Delta12-FADS-like 47 329 - -
Lja1g1223 384 PANTHER OLEATE HYDROXYLASE FAH12 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1223 Lja-Chr1 12621185 12626139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1223 1 383 Lipid Metabolism Gene Families AT3G12120 77.546 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1223 K10256 - gmx:100805040 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1223 1 12621185 12626139 Lja1g1223 1 12621185 12626139 ECH
Lja1g1223 1 12621185 12626139 Lja5g2302 5 41341783 41345003 PCT