Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2229 ATGGGTTCTGTTGTTGGCATTCATGTCTCTTTTCTCCCTCTTGGTCCTCCTAATACTAAAATAGTAACATCTGTTTATGCATTTTGGTCAGGATTAAAATCAGGCAAGATTTTCTCTATGGGAGAAGCACCCACACACATTCCTCAAAGCCTGCAGAATGGAAGACATTTCGAAACAGCTACTACCATTGGTGATAAAACGTATGTCATTGGTGGAGCTGATGGTGAAACTCTGTCCATTGAAGTTCGAATTATCGACAAATGTCTTGGACAGTGGATTAATCCCTTTGTTCTTGGCACCAAACCCATGTCATGTGGAGGCCACTCAGCAGTGTTTTTGAAAGACCGAATACTAATTGTTAAGAAGAATTCTAAGCCAGATGATCATACATGGTTTCTGGAGATAGACACCCCATATGTGAGGCTGCAGAAAAAAGTTGTGGGGAGTGAGGTTGTTGCATGGAGTAAGGGTGTGGTAGGAAATGCTGAAAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCAATGCTCATGAAGGAATTCCCATCTATGTTTGGTTTCTCTGTGAGCCACACTACCCGTGCCCCAAGAGGCATGGAGAAAGATGGGGTCCATTACCATTTTACTGAGAAGATTGTTATGGAAAAAGATATTAAAGATGGAAAGTTTCTTGAGTTTGCTTCTGTGCATGGTAATCTCTATGGGACCAGTGTTGAGGCTGTTGAACTGGTATCCGATGCAGGGAAAAGATGTATTCTTGACATTGATGTTCAAGGGGCTAGATCTGTGAGAGCTAGTTCTCTTGAAGCCGTATTCATCTTCATCTGCCCCCCATCAATGGAAGAACTGGAGAAGCGTCTTCGTGACAGAGGAACAGAAACAGAAGAACAGGTCCTAAAGCGGTTGCGAAATGCACAGACTGAGATTGAGCAAGGGAAATCATCAGGGATATTTGATTTCATCTTATACAATGACAAACTTGAGGAGTGTTATGAGAGTCTGAAGAAATTACTGGGACTTGATGGCGGTGTCACTCCTACACCCAAGTCAGCACCAAGCGTGATCAATCTCCCAAAGGATCATTCAGTGTCCAAAATTGATGACAAAATCATCATAAACTGCATGTCTCCAAAGAATTTGATCATGTTAGATGTGTCCTCACTTAAAGGGGGTGCACCTGGACGGACAAGAGGGCTAGATTTTCGAGCCATTGACTCATTTTCAGACGGATGCTAA 1254 0.4266 MGSVVGIHVSFLPLGPPNTKIVTSVYAFWSGLKSGKIFSMGEAPTHIPQSLQNGRHFETATTIGDKTYVIGGADGETLSIEVRIIDKCLGQWINPFVLGTKPMSCGGHSAVFLKDRILIVKKNSKPDDHTWFLEIDTPYVRLQKKVVGSEVVAWSKGVVGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKIVMEKDIKDGKFLEFASVHGNLYGTSVEAVELVSDAGKRCILDIDVQGARSVRASSLEAVFIFICPPSMEELEKRLRDRGTETEEQVLKRLRNAQTEIEQGKSSGIFDFILYNDKLEECYESLKKLLGLDGGVTPTPKSAPSVINLPKDHSVSKIDDKIIINCMSPKNLIMLDVSSLKGGAPGRTRGLDFRAIDSFSDGC* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2229 417 Gene3D - 21 156 IPR015915 GO:0005515
Lja5g2229 417 Pfam Guanylate kinase 163 344 IPR008145 -
Lja5g2229 417 ProSitePatterns Guanylate kinase-like signature. 198 215 IPR020590 -
Lja5g2229 417 SMART gk_7 162 348 IPR008145 -
Lja5g2229 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 344 IPR027417 -
Lja5g2229 417 PANTHER GUANYLATE KINASE 1 65 377 - -
Lja5g2229 417 PANTHER GUANYLATE KINASE-RELATED 65 377 - -
Lja5g2229 417 TIGRFAM guanyl_kin: guanylate kinase 164 344 IPR017665 GO:0004385|GO:0006163
Lja5g2229 417 Gene3D - 159 347 IPR027417 -
Lja5g2229 417 CDD GMPK 165 341 - -
Lja5g2229 417 SUPERFAMILY Galactose oxidase, central domain 49 139 IPR011043 -
Lja5g2229 417 ProSiteProfiles Guanylate kinase-like domain profile. 163 345 IPR008144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2229 Lja-Chr5 37536155 37539305 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2229 K00942 - gmx:100812658 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2229 5 37536155 37539305 Lja5g2229 5 37536155 37539305 ECH
Lja1g1281 1 13224138 13228297 Lja5g2229 5 37536155 37539305 PCT