Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1281 ATGGGAGAAGCACCGGCATTCCTTGTTGATGAACTGCAGGACGGGCCTGTTAATGGCTATGAATTGAAAAACGGATCTTGCAAAACAACTACTACCATTGGTGATAAAACGTATGTCATTACTGGAGCTGATGATGGCACTTTGTCCATTGAAGTTCAAATTTTTGACCGTAATCTTGGAGAATGGGTTCACCCCACTGTGCTAGGCATCAAACCCATGTCATGCAAAGGCCACTCAACAGTGCTTTTGGAAGACAGAATGCTAATTCTTAAGAAGGGTTCTAAACCAAATGATCAAATATGGTTCCTGGAGGTTGACACGCCATATGTTAGGCAGCAACGAAAAATTTCGGGGTCTGAGGTTGTTGCGTGGAGTAAGGGTGTGATAGGCAATGCTGAGAAGCCTGTTGTTATTAGTGGTCCTTCTGGAGTTGGTAAAGGAACACTGATAACAATGCTCATGCAGGAGTTCCCATCTATGTTTGGTTTTTCTGTGAGCCACACCACCCGAGCTCCAAGAAATATTGAGGAAGATGGGGTCCATTACCATTTCACTGAGAAAAGTGTAATGGAGAAAGAGATTAAAAATGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGTAATTTGTATGGAACCAGTGTTGAGGCTGTTGAAATGGTAGCAGATGCAGGGAAAAGGTGTATTCTTGATATTGATGTTCAAGGGGCAAGATCCGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTATCTGCCCCCCATCAATGAAAGAGCTGGAGAAGCGTCTTCGTGACCGAGGGACAGAGAAAGAGGAACAAATCTTGAAGCGACTGCGTAATGCTGAGGCTGAGATTGAGCAAGGGAAGTCTTCTCAGATATTTGATTTCATCCTGTACAATGACAACCTTGAGGAGTGTTATGAGAAACTTAAGAAATTATTGGGACTTGATAGTTTTATCACTGCTCCACTCAAATCAGCACCCAGAGAGATTAATCTACCAATGGATTTTTCAGTGTCTAAAACTGATGACAAAATCATCATAAACTGCATCTCTTCAGGATTGGAGAAGGAATCAAATAACTTGATCACATTGGATATTTCCTCACTAAAAGGGGGCGCACCTGGACGGACAAGAGGGCTTGAGCTCAGCTAA 1155 0.4277 MGEAPAFLVDELQDGPVNGYELKNGSCKTTTTIGDKTYVITGADDGTLSIEVQIFDRNLGEWVHPTVLGIKPMSCKGHSTVLLEDRMLILKKGSKPNDQIWFLEVDTPYVRQQRKISGSEVVAWSKGVIGNAEKPVVISGPSGVGKGTLITMLMQEFPSMFGFSVSHTTRAPRNIEEDGVHYHFTEKSVMEKEIKNGKFLEFASVHGNLYGTSVEAVEMVADAGKRCILDIDVQGARSVRASSLEAIFIFICPPSMKELEKRLRDRGTEKEEQILKRLRNAEAEIEQGKSSQIFDFILYNDNLEECYEKLKKLLGLDSFITAPLKSAPREINLPMDFSVSKTDDKIIINCISSGLEKESNNLITLDISSLKGGAPGRTRGLELS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1281 384 SMART gk_7 132 318 IPR008145 -
Lja1g1281 384 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Lja1g1281 384 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Lja1g1281 384 SUPERFAMILY Galactose oxidase, central domain 29 113 IPR011043 -
Lja1g1281 384 Pfam Guanylate kinase 133 314 IPR008145 -
Lja1g1281 384 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 323 - -
Lja1g1281 384 PANTHER GUANYLATE KINASE-RELATED 1 323 - -
Lja1g1281 384 Gene3D - 129 318 IPR027417 -
Lja1g1281 384 Coils Coil 264 291 - -
Lja1g1281 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Lja1g1281 384 CDD GMPK 135 311 - -
Lja1g1281 384 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1281 Lja-Chr1 13224138 13228297 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1281 K00942 - gmx:100808931 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1281 1 13224138 13228297 Lja1g1281 1 13224138 13228297 ECH
Lja1g1281 1 13224138 13228297 Lja5g2229 5 37536155 37539305 PCT