Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2226 ATGATGACCCTCCACAGATATCTCTCATACCTTATCATCCTAATTTCTTTTGTTGCTTGTTGTAGCTCCTTGCAAGAGGACCCACTTAGTTCAATTGTTGAGGATTCGCCTAACATTGATGATGGTGGGACAACATTTAAGGGCTTCATCAAGCAAACAACAGATAATATGTTGAGATTGAGGAGTTCAGAAAAGTTGGGTGACACTTCTTCGCTTAAAACGGTTAACGTCAATGATTATGGAGCTGAAGGAGATGGTCACACTGATGATACACAAGCATTCAAGAAGGCTTGGCAAGTAGCATGCTCATCTAGTGGAGCAATTCTTGTGGTGCCAAAGAAGAATTATCTTCTCAAGCCAATCACATTCTCTGGCCCTTGCAAATCCAACACCGCAGTCCAGATCTCTGGAACCCTTCTGGCATCAGATAACCCATCTGATTACAGTGAAGACCCCGCACACTGGCTTATGTTTGACAGCGTTCGGAAACTATCTGTCAATGGTGGTGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGCTTCCTTGCAAGAATGCCCCTACGGCGCTGACATTTTACAAATGCCGCAACTTAGTAGTTGGGGATTTGACGATAAAGAATGGCCAGCAAATTCATGTTTCGTTCCAGGATTCCCAGGGTGTTAAAGTTTCTGATCTCACTGTGACAGCACCAGGCGAGAGTCCAAACACTGATGGAATTCACGTCACAAATACACAAAACATCCAAATCTCAAGCTCCAATATTGGAACTGGAGATGATTGTATATCAATTGTAAGTGGATCCAGGAATTTACAAGCCACAGACATAACCTGTGGACCAGGCCATGGTATTAGCATCGGAAGCTTAGGAGCTGGAAATTCAAAGGAATTTGTTTCAGGAATAACAGTGAACGGAGCTAAATTTGTTGGAACCACAAATGGAGTAAGAATTAAAACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTAAGAATATTCAAATGGACAATGTGACCAACCCCATAATAATAGATCAAAACTATTGTGACCAAGCGAATCCGTGCGAAAAACAGAACTCCGCGGTTCAGATTCGTAATGTGATGTACCAGAACATAAAAGGCACAAGTGCATCTGATGTGGCTGTGCAATTTGATTGCAGCGAGAACTCTCCATGCGAGGGGATAGTATTGCAGAACATAAACCTGCAACTTGAAGGTGAAGGAGAGGCCAAGGCTTCATGCAACGATGTTAAATTGTCCTACCGAGGAGATGTTAGCCCTCGTTGTAGCACATAG 1329 0.4304 MMTLHRYLSYLIILISFVACCSSLQEDPLSSIVEDSPNIDDGGTTFKGFIKQTTDNMLRLRSSEKLGDTSSLKTVNVNDYGAEGDGHTDDTQAFKKAWQVACSSSGAILVVPKKNYLLKPITFSGPCKSNTAVQISGTLLASDNPSDYSEDPAHWLMFDSVRKLSVNGGGTINGNGNIWWQNSCKRNKKLPCKNAPTALTFYKCRNLVVGDLTIKNGQQIHVSFQDSQGVKVSDLTVTAPGESPNTDGIHVTNTQNIQISSSNIGTGDDCISIVSGSRNLQATDITCGPGHGISIGSLGAGNSKEFVSGITVNGAKFVGTTNGVRIKTWQGGSGSASNIKFKNIQMDNVTNPIIIDQNYCDQANPCEKQNSAVQIRNVMYQNIKGTSASDVAVQFDCSENSPCEGIVLQNINLQLEGEGEAKASCNDVKLSYRGDVSPRCST* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2226 442 SMART pbh1 254 275 IPR006626 -
Lja5g2226 442 SMART pbh1 227 253 IPR006626 -
Lja5g2226 442 SMART pbh1 336 357 IPR006626 -
Lja5g2226 442 SMART pbh1 307 328 IPR006626 -
Lja5g2226 442 PANTHER - 6 441 - -
Lja5g2226 442 Pfam Glycosyl hydrolases family 28 108 429 IPR000743 GO:0004650|GO:0005975
Lja5g2226 442 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Lja5g2226 442 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lja5g2226 442 PANTHER ENDO POLYGALACTURONASE 6 441 - -
Lja5g2226 442 SUPERFAMILY Pectin lyase-like 72 441 IPR011050 -
Lja5g2226 442 Gene3D - 61 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2226 Lja-Chr5 37477244 37482426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2226 1 441 Glycoside Hydrolase AT3G57510 54.157 7.62e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2226 K01184 - gmx:100816917 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2226 5 37477244 37482426 Lja5g2226 5 37477244 37482426 ECH
Lja5g2226 5 37477244 37482426 Lja1g1287 1 13373130 13376517 PCT