Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1287 ATGGGAGAAGCTATAATGGCCCCCTTTAAACATCATCTTCTTTCATTCACAATTATCATCATTTCATTTGTTGCTTGTTATAGCACCTTGCAAGATCAGGACCCACTGATCAGTAGTATATATGTTGATGATTCACCTAATTACATTGATGATGGTGGGAGTGGGACATTCAAGAACCTGATCAAGCAAAGCACAAATGTTCTGAGCTTAAACAGGTTTGAAGAGTTGGGTGGCATTTCAAGTTCGCTTGAAATTGTTAATGTCAATGATTATGGAGCTAAAGGGAATGGTCTAACTGATGACACAGAGGCATTCAATAAGGCTTGGCAAGTAGCATGTTCTTCTGAGGAAGCAGTTCTTGTGGTGCCTCAGAAGAATTATCTACTCAAACCAATAAGATTCTCTGGTCCTTGCAAATCTAACACCATAGTTCAGATTTCTGGAACTCTTGAAGCGTCAGATGATCCCTCAGATTACAGTGAAGATAAAAAACATTGGCTTGTATTTGACAGTGTTCAGAAATTATTAGTTAATGGTGGTGGAACTATCAATGGAAAGGGCAACATATGGTGGCAAAATTCATGCAAAAGAAACAAAAAGAAACCTTGCAAGGATGCCCCAACTGCTCTAACTTTTTATAATTGCAAGGACTTAATAGTTGAGAATATGACCATAGAAAATGCCCAACAAATCCATGTCTCATTCCAGGACTCCATGAATGTTAAAGTTTCTGGTCTCCTTGTGACAGCACCAGGGGATAGCCCTAATACGGATGGGATTCATGTCACAAATACCCAAAACATCAAAATCTCAAGCTCTGTTATAGGAACTGGTGATGATTGTATATCAATAGTACATGGATCCAAGAATGTAGAAGCCACAGACATAACTTGTGGACCTGGCCATGGTATCAGTATTGGAAGCTTAGGGGCTGGAAAATCAAAGGAATTTGTTTCAGGAGTCATAGTAGATGGAGCTAAGCTTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGTTCAGGAATGGCTAGCAACATCCAATTTAAGAACATTCAAATGGATAATGTGACCAACCCCATAATAATTGACCAGAATTACTGTGACAAAAAGAAGAAGCCATGCAAGAAACAGTTGCAGAAATCGGCTATCCAGATTAGGAATGTATTGTATCAGAACATAGTAGGCACAAGTGCTTCGGATTTAGCTGTGAAGTTTGATTGCAGCGAGGAGTTTCCATGTCAGGAGATAGTAATGCAGAACATAGACCTGAAAGGTGAAGGAGGAGAAACCTCTGAGGCTTTATGCAACAATGTTAAATTGTCTTACTTAGGACACGTTAACCCTCGCTGTAACTCTAATTAG 1374 0.3945 MGEAIMAPFKHHLLSFTIIIISFVACYSTLQDQDPLISSIYVDDSPNYIDDGGSGTFKNLIKQSTNVLSLNRFEELGGISSSLEIVNVNDYGAKGNGLTDDTEAFNKAWQVACSSEEAVLVVPQKNYLLKPIRFSGPCKSNTIVQISGTLEASDDPSDYSEDKKHWLVFDSVQKLLVNGGGTINGKGNIWWQNSCKRNKKKPCKDAPTALTFYNCKDLIVENMTIENAQQIHVSFQDSMNVKVSGLLVTAPGDSPNTDGIHVTNTQNIKISSSVIGTGDDCISIVHGSKNVEATDITCGPGHGISIGSLGAGKSKEFVSGVIVDGAKLSGTTNGVRIKTWQGGSGMASNIQFKNIQMDNVTNPIIIDQNYCDKKKKPCKKQLQKSAIQIRNVLYQNIVGTSASDLAVKFDCSEEFPCQEIVMQNIDLKGEGGETSEALCNNVKLSYLGHVNPRCNSN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1287 457 SUPERFAMILY Pectin lyase-like 84 455 IPR011050 -
Lja1g1287 457 Gene3D - 80 453 IPR012334 -
Lja1g1287 457 ProSitePatterns Polygalacturonase active site. 295 308 IPR000743 GO:0004650|GO:0005975
Lja1g1287 457 Pfam Glycosyl hydrolases family 28 118 443 IPR000743 GO:0004650|GO:0005975
Lja1g1287 457 PANTHER - 11 455 - -
Lja1g1287 457 PANTHER ENDO POLYGALACTURONASE 11 455 - -
Lja1g1287 457 SMART pbh1 318 339 IPR006626 -
Lja1g1287 457 SMART pbh1 215 235 IPR006626 -
Lja1g1287 457 SMART pbh1 238 264 IPR006626 -
Lja1g1287 457 SMART pbh1 265 286 IPR006626 -
Lja1g1287 457 SMART pbh1 347 368 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1287 Lja-Chr1 13373130 13376517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1287 45 456 Glycoside Hydrolase AT2G41850 58.195 2.77e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1287 K01184 - gmx:100797601 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1287 1 13373130 13376517 Lja1g1287 1 13373130 13376517 ECH
Lja5g2226 5 37477244 37482426 Lja1g1287 1 13373130 13376517 PCT