Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2217 ATGTCTAGCACGACAAAAGTCTTGGATCCTGCATTCCAAGGAGTGGGTCAAAGATTAGGAACTGAAATATGGAGGATTGAAAATTTTCAGCCAGTTCCATTGCCCAAATCTGAATATGGGAAATTCTACATGGGAGATTCATACATCATCTTGCAGACAAGGCAAGGCAAAGGAGGAACTTATTTTTACGATTTACACTTCTGGATTGGAAAGGATACAAGTCAGGATGAAGCTGGAACTGCAGCCATTAAAGCTGTTGAACTTGATGCAGCTCTTGGAGGACGTGCAGTGCAACACAGGGAAATTCAAGGACATGAATCTGACAAATTTTTGTCATACTTTAAGCCTTGTATAATACCATTAGAGGGGGGTGTTGCATCTGGATTTAGAAAACCTGAAGAAGAGGAGTTTGAAACACATTTGTATGTCTGTAAAGGGAAAAGAGCAGTCAGATTGAAAGAGGTCCCTTTTGCAAGGTCTTCATTGAACCATGATGATGTATTCATCCTCAACACTCAAAATAAGATTTATCAGTTCAATGGTGCAAATTCAAATATTCAGGAAAGAGCCAAGGCTTTGGAAGTTATACAGTTTCTGAAAGAAAAATATCATGAAGGAAAATGCGATGTGGCAATTGTTGATGATGGCAAGTTAGACACTGAGTCAGACTCGGGTGAATTTTGGGTCCTCTTTGGTGGTTTTGCGCCCATTGGGAAGAAGGTAATCAGTGAGGATGATAACATTCCAGAGGCAATTCCCGCTCAGTTGTATAGTATCGTTGATGGTGAGGTCAAGTCTATTGAAGGTGAACTATCTAAATCACTGCTGGAAAACAACCAATGCTATTTATTGGACTGTGGTGCTGAAGTATTTGTCTGGGTTGGCCGAGTAACACAAGTTGAAGAACGAAAAGCAGCTTGCCAGGCAGCTGAGAAGTACGTTGCAAGCCAAAATAGACCAAAATCAACCAGGATAACCAGGATTATTCAAGGTTATGAAATACATTCATTCAAGTCCAACTTTGATTCTTGGCCATCAGGAACTACTAGTATCGGTGCTGAGGAAGGAAGAGGAAAAGTTGCAGCATTGCTAAAGCAACAAGGTATGGGTGTTAAAGGAATGTCAAAAAGTACACCGGTAAATGAGGAAATTCCACCATTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGCGAGTCAATGAAAGTGCGAAGAACCCATTGCTGAAGGAGGATATTGGTAAATTCTATAGTGGAGATTGTTACATTGTACTGTACACATACCATTCTGGTGAGAGGAAAGAAGATTACTTCTTGTGCTGCTGGTTTGGAAAAGACAGCATTGAGGAGGACCAAACAATATCTACTCAGCTAGCCAATAAAATGTCAAACTCATTGAAGGGTAGACCTGTTCAGGGTCGCATATTCGAAGGTAAAGAGCCACCACAGTTTATTGCTCTTTTCCAGCCCATGGTAGTCCTTAAGGGAGGTTTGAGCACTGGATACAAAAAGTTAATAGCAGAAGACAATGGTTTACCAGATGAGACATACACATCTGAGAGTATTGCACTTATTCGAATTTCTGGAACTTCTATTCATAATAACAAGGCAGTGCAAGTTGATGCAGTACCGTCATCATTGAATTCCACTGAGTGCTTTCTCCTGCAATCTGGCTCTACAATTTTCACATGGCATGGGAATCAGTCTTCCTTTGAACAGCAGCAGCTAGCAGCAAAGGTCGCTGAATTTTTAAGGCCAGGAGTTGCTTTAAAGCATGCTAAAGAAGGTACAGAAAGCTCAGCTTTCTGGTTTGCACTAGGAGGAAAACAAAGTTATACAAGCAAGAAAGTTACTAATGAGATTGTTAGAGACCCACATCTGTTTACTTTCTCATTTAGTAAAGGAAAGTTACATGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACGGAGGATATCCTAATACTTGACACACATGCAGAAGTGTTTATTTGGATTGGTCACTCTGTTGACCCAAAAGAAAAGCAAAATACTTTTGAAATTGGCCAGAAATACATAGACATGGCTGCATCTCTGGAGGGACTATCTCTGCATGTACCGTTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCATGGGATCATGCAAAAGCTTTGATTCAGGGAAACTCTTTCCAGAAAAAGGTGTCTCTACTCTTTGGGGTTGGCCATGCTGTGGAGGAAAAGTCAAATGGGTCAAGTCTAGGGGGAGCCAGACAAAGAGCAGAAGCAATGGCTGCCTTATCATCTGCGTTTAGTTCATCATCGGAGAGAGCATCCACTATGTCACAAGATAGATTGACTGGGCTAAACCAAGGAGGTCCAAGACAAAGGGCCGAAGCTTTAGCTGCTTTAAACTCTGCATTTAATTCATCTTCTGGGACGAAGACATATACTCCTAGGCCATCTGGAAAAGGTCAAAGAGCTGCTGCAGTAGCTGCTCTTTCATCTGTTCTTACTGCTGAAAAGAAGAAACCTGATGTTTCTCAAGTGGATGGTGGTAGTCCTGTCGCAGAAAGTAGCACTTCTGAAACTGTGAGTGGAAATGCCCATTTTGAGATCGAAAAAGCTGAAGAAGCCAATGAAACAGAAGAACTCGCCCCTGAAACTGGTAGCAATGGGGATTTGGAACCAAAACAAGAAGATATGGATGATGGTGATGATAGTCAAAGTAGTCAAAGGACGTTCAGTTATGATCAGTTAAAGACTACATCTGGTAAAAATGTGCCTGGAATTGATCTTAAGCGTAGAGAGGCTTATTTGTCAGACGAAGAATTTGAAACTGTGATTGGAATGGTAAAAGATGCATTTTATAAGTTGCCAAAATGGAAGCAAGACTTGCTGAAAAAGAAATTTGAATTGTTTTAG 2928 0.4081 MSSTTKVLDPAFQGVGQRLGTEIWRIENFQPVPLPKSEYGKFYMGDSYIILQTRQGKGGTYFYDLHFWIGKDTSQDEAGTAAIKAVELDAALGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFRKPEEEEFETHLYVCKGKRAVRLKEVPFARSSLNHDDVFILNTQNKIYQFNGANSNIQERAKALEVIQFLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDNIPEAIPAQLYSIVDGEVKSIEGELSKSLLENNQCYLLDCGAEVFVWVGRVTQVEERKAACQAAEKYVASQNRPKSTRITRIIQGYEIHSFKSNFDSWPSGTTSIGAEEGRGKVAALLKQQGMGVKGMSKSTPVNEEIPPLLEGGGKMEVWRVNESAKNPLLKEDIGKFYSGDCYIVLYTYHSGERKEDYFLCCWFGKDSIEEDQTISTQLANKMSNSLKGRPVQGRIFEGKEPPQFIALFQPMVVLKGGLSTGYKKLIAEDNGLPDETYTSESIALIRISGTSIHNNKAVQVDAVPSSLNSTECFLLQSGSTIFTWHGNQSSFEQQQLAAKVAEFLRPGVALKHAKEGTESSAFWFALGGKQSYTSKKVTNEIVRDPHLFTFSFSKGKLHVEEVYNFSQDDLLTEDILILDTHAEVFIWIGHSVDPKEKQNTFEIGQKYIDMAASLEGLSLHVPLYKVTEGNEPCFFTTYFSWDHAKALIQGNSFQKKVSLLFGVGHAVEEKSNGSSLGGARQRAEAMAALSSAFSSSSERASTMSQDRLTGLNQGGPRQRAEALAALNSAFNSSSGTKTYTPRPSGKGQRAAAVAALSSVLTAEKKKPDVSQVDGGSPVAESSTSETVSGNAHFEIEKAEEANETEELAPETGSNGDLEPKQEDMDDGDDSQSSQRTFSYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFYKLPKWKQDLLKKKFELF* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2217 975 CDD gelsolin_S5_like 520 610 - -
Lja5g2217 975 SMART VHP_1 940 975 IPR003128 GO:0003779|GO:0007010
Lja5g2217 975 MobiDBLite consensus disorder prediction 854 869 - -
Lja5g2217 975 CDD gelsolin_S3_like 268 343 - -
Lja5g2217 975 ProSiteProfiles Headpiece (HP) domain profile. 910 975 IPR003128 GO:0003779|GO:0007010
Lja5g2217 975 MobiDBLite consensus disorder prediction 842 929 - -
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 511 616 - -
Lja5g2217 975 Gene3D Severin 133 245 IPR029006 -
Lja5g2217 975 Gene3D Severin 388 521 IPR029006 -
Lja5g2217 975 CDD gelsolin_S4_like 386 487 - -
Lja5g2217 975 CDD gelsolin_S6_like 623 721 - -
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 383 529 - -
Lja5g2217 975 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 675 694 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 534 554 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 594 613 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Lja5g2217 975 PRINTS Gelsolin family signature 646 668 IPR007122 GO:0051015
Lja5g2217 975 Gene3D Severin 615 729 IPR029006 -
Lja5g2217 975 SUPERFAMILY VHP, Villin headpiece domain 910 975 IPR036886 GO:0003779|GO:0007010
Lja5g2217 975 Gene3D Villin headpiece domain 899 975 IPR036886 GO:0003779|GO:0007010
Lja5g2217 975 Gene3D Severin 5 132 IPR029006 -
Lja5g2217 975 MobiDBLite consensus disorder prediction 910 927 - -
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 9 148 - -
Lja5g2217 975 MobiDBLite consensus disorder prediction 773 797 - -
Lja5g2217 975 PANTHER VILLIN 1 975 IPR007122 GO:0051015
Lja5g2217 975 Pfam Gelsolin repeat 640 677 IPR007123 -
Lja5g2217 975 Pfam Gelsolin repeat 29 111 IPR007123 -
Lja5g2217 975 Pfam Gelsolin repeat 150 217 IPR007123 -
Lja5g2217 975 Pfam Gelsolin repeat 268 337 IPR007123 -
Lja5g2217 975 Pfam Gelsolin repeat 533 584 IPR007123 -
Lja5g2217 975 Pfam Gelsolin repeat 409 484 IPR007123 -
Lja5g2217 975 SMART VILL_6 137 234 IPR007122 GO:0051015
Lja5g2217 975 SMART VILL_6 251 344 IPR007122 GO:0051015
Lja5g2217 975 SMART VILL_6 19 117 IPR007122 GO:0051015
Lja5g2217 975 SMART VILL_6 392 490 IPR007122 GO:0051015
Lja5g2217 975 SMART VILL_6 625 720 IPR007122 GO:0051015
Lja5g2217 975 SMART VILL_6 519 608 IPR007122 GO:0051015
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 597 719 - -
Lja5g2217 975 Pfam Villin headpiece domain 940 975 IPR003128 GO:0003779|GO:0007010
Lja5g2217 975 MobiDBLite consensus disorder prediction 810 830 - -
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 134 238 - -
Lja5g2217 975 MobiDBLite consensus disorder prediction 773 791 - -
Lja5g2217 975 MobiDBLite consensus disorder prediction 895 909 - -
Lja5g2217 975 Gene3D Severin 522 614 IPR029006 -
Lja5g2217 975 Gene3D Severin 246 355 IPR029006 -
Lja5g2217 975 CDD gelsolin_S1_like 12 124 - -
Lja5g2217 975 CDD gelsolin_S2_like 138 232 - -
Lja5g2217 975 PANTHER VILLIN-3-LIKE ISOFORM X1 1 975 - -
Lja5g2217 975 SUPERFAMILY Actin depolymerizing proteins 223 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2217 Lja-Chr5 36813764 36835438 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2217 - - gmx:100788765 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1304 1 13594012 13603321 Lja5g2217 5 36813764 36835438 PCT